Experiment: m.b. Thallium(I) acetate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05260 and PGA1_c05270 are separated by 74 nucleotides PGA1_c05270 and PGA1_c05280 are separated by 72 nucleotides
PGA1_c05260: PGA1_c05260 - exopolysaccharide production protein ExoY-like protein, at 521,727 to 522,452
_c05260
PGA1_c05270: PGA1_c05270 - ATPases involved in chromosome partitioning, at 522,527 to 523,600
_c05270
PGA1_c05280: PGA1_c05280 - hypothetical protein, at 523,673 to 524,959
_c05280
Position (kb) 522
523
524 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 521.533 kb on + strand at 521.533 kb on + strand at 521.533 kb on + strand at 521.538 kb on + strand at 521.538 kb on + strand at 521.539 kb on + strand at 521.540 kb on + strand at 521.540 kb on + strand at 521.549 kb on - strand at 521.615 kb on + strand at 521.622 kb on + strand at 521.623 kb on - strand at 521.671 kb on + strand at 521.713 kb on - strand at 521.715 kb on + strand at 521.723 kb on - strand at 521.723 kb on - strand at 521.758 kb on + strand at 521.804 kb on + strand, within PGA1_c05260 at 521.804 kb on + strand, within PGA1_c05260 at 521.806 kb on - strand, within PGA1_c05260 at 521.823 kb on + strand, within PGA1_c05260 at 521.831 kb on - strand, within PGA1_c05260 at 521.831 kb on - strand, within PGA1_c05260 at 521.839 kb on - strand, within PGA1_c05260 at 521.883 kb on + strand, within PGA1_c05260 at 521.891 kb on - strand, within PGA1_c05260 at 521.891 kb on - strand, within PGA1_c05260 at 521.891 kb on - strand, within PGA1_c05260 at 521.900 kb on - strand, within PGA1_c05260 at 521.905 kb on + strand, within PGA1_c05260 at 521.911 kb on + strand, within PGA1_c05260 at 521.935 kb on + strand, within PGA1_c05260 at 521.947 kb on + strand, within PGA1_c05260 at 521.947 kb on + strand, within PGA1_c05260 at 521.947 kb on + strand, within PGA1_c05260 at 521.947 kb on + strand, within PGA1_c05260 at 521.947 kb on + strand, within PGA1_c05260 at 521.955 kb on - strand, within PGA1_c05260 at 521.955 kb on - strand, within PGA1_c05260 at 521.955 kb on - strand, within PGA1_c05260 at 521.955 kb on - strand, within PGA1_c05260 at 521.955 kb on - strand, within PGA1_c05260 at 521.955 kb on - strand, within PGA1_c05260 at 521.974 kb on + strand, within PGA1_c05260 at 521.983 kb on + strand, within PGA1_c05260 at 521.983 kb on + strand, within PGA1_c05260 at 521.983 kb on + strand, within PGA1_c05260 at 521.983 kb on + strand, within PGA1_c05260 at 521.983 kb on + strand, within PGA1_c05260 at 521.983 kb on + strand, within PGA1_c05260 at 521.983 kb on + strand, within PGA1_c05260 at 521.983 kb on + strand, within PGA1_c05260 at 521.983 kb on + strand, within PGA1_c05260 at 521.986 kb on - strand, within PGA1_c05260 at 521.991 kb on - strand, within PGA1_c05260 at 521.991 kb on - strand, within PGA1_c05260 at 521.991 kb on - strand, within PGA1_c05260 at 521.991 kb on - strand, within PGA1_c05260 at 521.991 kb on - strand, within PGA1_c05260 at 521.991 kb on - strand, within PGA1_c05260 at 521.991 kb on - strand, within PGA1_c05260 at 522.007 kb on + strand, within PGA1_c05260 at 522.015 kb on - strand, within PGA1_c05260 at 522.025 kb on + strand, within PGA1_c05260 at 522.036 kb on - strand, within PGA1_c05260 at 522.040 kb on + strand, within PGA1_c05260 at 522.048 kb on - strand, within PGA1_c05260 at 522.048 kb on - strand, within PGA1_c05260 at 522.097 kb on + strand, within PGA1_c05260 at 522.131 kb on - strand, within PGA1_c05260 at 522.170 kb on - strand, within PGA1_c05260 at 522.170 kb on - strand, within PGA1_c05260 at 522.185 kb on + strand, within PGA1_c05260 at 522.193 kb on - strand, within PGA1_c05260 at 522.195 kb on + strand, within PGA1_c05260 at 522.228 kb on + strand, within PGA1_c05260 at 522.345 kb on + strand, within PGA1_c05260 at 522.353 kb on - strand, within PGA1_c05260 at 522.360 kb on + strand, within PGA1_c05260 at 522.397 kb on + strand at 522.405 kb on - strand at 522.420 kb on - strand at 522.424 kb on + strand at 522.426 kb on - strand at 522.455 kb on + strand at 522.455 kb on + strand at 522.455 kb on + strand at 522.455 kb on + strand at 522.455 kb on + strand at 522.502 kb on - strand at 522.555 kb on + strand at 522.565 kb on - strand at 522.622 kb on - strand at 522.662 kb on + strand, within PGA1_c05270 at 522.670 kb on - strand, within PGA1_c05270 at 522.859 kb on + strand, within PGA1_c05270 at 522.867 kb on - strand, within PGA1_c05270 at 522.907 kb on + strand, within PGA1_c05270 at 522.907 kb on + strand, within PGA1_c05270 at 522.954 kb on - strand, within PGA1_c05270 at 522.960 kb on - strand, within PGA1_c05270 at 522.961 kb on + strand, within PGA1_c05270 at 522.987 kb on + strand, within PGA1_c05270 at 522.987 kb on + strand, within PGA1_c05270 at 523.029 kb on + strand, within PGA1_c05270 at 523.029 kb on + strand, within PGA1_c05270 at 523.029 kb on + strand, within PGA1_c05270 at 523.037 kb on + strand, within PGA1_c05270 at 523.037 kb on - strand, within PGA1_c05270 at 523.037 kb on - strand, within PGA1_c05270 at 523.037 kb on - strand, within PGA1_c05270 at 523.148 kb on + strand, within PGA1_c05270 at 523.148 kb on + strand, within PGA1_c05270 at 523.148 kb on + strand, within PGA1_c05270 at 523.148 kb on + strand, within PGA1_c05270 at 523.156 kb on - strand, within PGA1_c05270 at 523.156 kb on - strand, within PGA1_c05270 at 523.251 kb on - strand, within PGA1_c05270 at 523.256 kb on + strand, within PGA1_c05270 at 523.264 kb on - strand, within PGA1_c05270 at 523.344 kb on + strand, within PGA1_c05270 at 523.363 kb on - strand, within PGA1_c05270 at 523.367 kb on + strand, within PGA1_c05270 at 523.370 kb on - strand, within PGA1_c05270 at 523.377 kb on - strand, within PGA1_c05270 at 523.458 kb on + strand, within PGA1_c05270 at 523.458 kb on - strand, within PGA1_c05270 at 523.460 kb on + strand, within PGA1_c05270 at 523.501 kb on - strand at 523.537 kb on - strand at 523.548 kb on + strand at 523.572 kb on + strand at 523.572 kb on + strand at 523.577 kb on + strand at 523.580 kb on - strand at 523.612 kb on + strand at 523.614 kb on + strand at 523.619 kb on + strand at 523.664 kb on + strand at 523.676 kb on + strand at 523.681 kb on + strand at 523.689 kb on - strand at 523.707 kb on - strand at 523.743 kb on - strand at 523.750 kb on + strand at 523.814 kb on + strand, within PGA1_c05280 at 523.852 kb on + strand, within PGA1_c05280 at 523.887 kb on + strand, within PGA1_c05280 at 523.887 kb on + strand, within PGA1_c05280 at 523.895 kb on - strand, within PGA1_c05280 at 523.936 kb on - strand, within PGA1_c05280 at 523.957 kb on + strand, within PGA1_c05280 at 523.957 kb on + strand, within PGA1_c05280 at 523.974 kb on + strand, within PGA1_c05280 at 523.986 kb on - strand, within PGA1_c05280 at 524.113 kb on + strand, within PGA1_c05280 at 524.192 kb on + strand, within PGA1_c05280 at 524.192 kb on + strand, within PGA1_c05280 at 524.193 kb on + strand, within PGA1_c05280 at 524.200 kb on - strand, within PGA1_c05280 at 524.220 kb on - strand, within PGA1_c05280 at 524.235 kb on + strand, within PGA1_c05280 at 524.246 kb on - strand, within PGA1_c05280 at 524.288 kb on + strand, within PGA1_c05280 at 524.288 kb on + strand, within PGA1_c05280 at 524.309 kb on - strand, within PGA1_c05280 at 524.347 kb on + strand, within PGA1_c05280 at 524.355 kb on - strand, within PGA1_c05280 at 524.355 kb on - strand, within PGA1_c05280 at 524.400 kb on + strand, within PGA1_c05280 at 524.400 kb on + strand, within PGA1_c05280 at 524.410 kb on + strand, within PGA1_c05280 at 524.436 kb on - strand, within PGA1_c05280 at 524.463 kb on + strand, within PGA1_c05280 at 524.464 kb on + strand, within PGA1_c05280 at 524.571 kb on - strand, within PGA1_c05280 at 524.578 kb on + strand, within PGA1_c05280 at 524.578 kb on + strand, within PGA1_c05280
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.002 mg/ml remove 521,533 + -0.4 521,533 + -1.7 521,533 + +0.1 521,538 + +0.7 521,538 + -0.4 521,539 + +0.5 521,540 + -1.7 521,540 + +1.1 521,549 - -0.0 521,615 + +1.5 521,622 + +0.4 521,623 - -1.0 521,671 + +0.3 521,713 - +0.2 521,715 + +1.3 521,723 - -0.0 521,723 - +0.3 521,758 + +0.9 521,804 + PGA1_c05260 0.11 +1.5 521,804 + PGA1_c05260 0.11 -0.5 521,806 - PGA1_c05260 0.11 +0.9 521,823 + PGA1_c05260 0.13 -0.1 521,831 - PGA1_c05260 0.14 +0.9 521,831 - PGA1_c05260 0.14 +1.1 521,839 - PGA1_c05260 0.15 +0.0 521,883 + PGA1_c05260 0.21 -0.0 521,891 - PGA1_c05260 0.23 +0.0 521,891 - PGA1_c05260 0.23 +0.5 521,891 - PGA1_c05260 0.23 -0.9 521,900 - PGA1_c05260 0.24 +0.3 521,905 + PGA1_c05260 0.25 +1.0 521,911 + PGA1_c05260 0.25 +2.1 521,935 + PGA1_c05260 0.29 +0.2 521,947 + PGA1_c05260 0.30 +0.1 521,947 + PGA1_c05260 0.30 +0.0 521,947 + PGA1_c05260 0.30 +0.9 521,947 + PGA1_c05260 0.30 +0.5 521,947 + PGA1_c05260 0.30 +0.8 521,955 - PGA1_c05260 0.31 +1.2 521,955 - PGA1_c05260 0.31 +0.6 521,955 - PGA1_c05260 0.31 +1.3 521,955 - PGA1_c05260 0.31 +0.4 521,955 - PGA1_c05260 0.31 -0.4 521,955 - PGA1_c05260 0.31 +0.7 521,974 + PGA1_c05260 0.34 +0.5 521,983 + PGA1_c05260 0.35 -0.0 521,983 + PGA1_c05260 0.35 -0.6 521,983 + PGA1_c05260 0.35 +1.4 521,983 + PGA1_c05260 0.35 +0.3 521,983 + PGA1_c05260 0.35 +1.0 521,983 + PGA1_c05260 0.35 +0.2 521,983 + PGA1_c05260 0.35 +1.3 521,983 + PGA1_c05260 0.35 -2.1 521,983 + PGA1_c05260 0.35 +1.5 521,986 - PGA1_c05260 0.36 -0.5 521,991 - PGA1_c05260 0.36 +0.1 521,991 - PGA1_c05260 0.36 -0.6 521,991 - PGA1_c05260 0.36 -0.9 521,991 - PGA1_c05260 0.36 -0.2 521,991 - PGA1_c05260 0.36 +0.5 521,991 - PGA1_c05260 0.36 -1.8 521,991 - PGA1_c05260 0.36 -0.7 522,007 + PGA1_c05260 0.39 +0.9 522,015 - PGA1_c05260 0.40 +1.6 522,025 + PGA1_c05260 0.41 +0.1 522,036 - PGA1_c05260 0.43 -0.1 522,040 + PGA1_c05260 0.43 -1.7 522,048 - PGA1_c05260 0.44 +0.7 522,048 - PGA1_c05260 0.44 -0.1 522,097 + PGA1_c05260 0.51 -0.5 522,131 - PGA1_c05260 0.56 +1.0 522,170 - PGA1_c05260 0.61 +0.0 522,170 - PGA1_c05260 0.61 -0.2 522,185 + PGA1_c05260 0.63 -0.1 522,193 - PGA1_c05260 0.64 +0.5 522,195 + PGA1_c05260 0.64 +1.3 522,228 + PGA1_c05260 0.69 +0.4 522,345 + PGA1_c05260 0.85 +0.1 522,353 - PGA1_c05260 0.86 +0.1 522,360 + PGA1_c05260 0.87 +0.1 522,397 + +0.7 522,405 - +1.0 522,420 - +0.1 522,424 + -0.2 522,426 - +1.2 522,455 + +1.3 522,455 + -0.6 522,455 + +0.9 522,455 + +0.2 522,455 + +0.4 522,502 - -0.6 522,555 + -0.7 522,565 - -1.2 522,622 - -3.2 522,662 + PGA1_c05270 0.13 -3.0 522,670 - PGA1_c05270 0.13 -1.9 522,859 + PGA1_c05270 0.31 -2.8 522,867 - PGA1_c05270 0.32 -2.2 522,907 + PGA1_c05270 0.35 -0.9 522,907 + PGA1_c05270 0.35 +0.7 522,954 - PGA1_c05270 0.40 -1.7 522,960 - PGA1_c05270 0.40 +0.1 522,961 + PGA1_c05270 0.40 -1.7 522,987 + PGA1_c05270 0.43 +0.4 522,987 + PGA1_c05270 0.43 -1.5 523,029 + PGA1_c05270 0.47 +0.1 523,029 + PGA1_c05270 0.47 -0.3 523,029 + PGA1_c05270 0.47 +1.1 523,037 + PGA1_c05270 0.47 -1.4 523,037 - PGA1_c05270 0.47 -0.1 523,037 - PGA1_c05270 0.47 -1.2 523,037 - PGA1_c05270 0.47 -1.9 523,148 + PGA1_c05270 0.58 -3.7 523,148 + PGA1_c05270 0.58 -0.8 523,148 + PGA1_c05270 0.58 -1.9 523,148 + PGA1_c05270 0.58 -1.2 523,156 - PGA1_c05270 0.59 -1.2 523,156 - PGA1_c05270 0.59 -1.6 523,251 - PGA1_c05270 0.67 -1.1 523,256 + PGA1_c05270 0.68 -1.5 523,264 - PGA1_c05270 0.69 -0.3 523,344 + PGA1_c05270 0.76 -1.6 523,363 - PGA1_c05270 0.78 -2.1 523,367 + PGA1_c05270 0.78 +0.1 523,370 - PGA1_c05270 0.78 -2.3 523,377 - PGA1_c05270 0.79 -2.5 523,458 + PGA1_c05270 0.87 -2.5 523,458 - PGA1_c05270 0.87 -1.7 523,460 + PGA1_c05270 0.87 -1.4 523,501 - -0.5 523,537 - -0.3 523,548 + -1.5 523,572 + -1.3 523,572 + -1.1 523,577 + -0.8 523,580 - -2.7 523,612 + -1.5 523,614 + +0.5 523,619 + +0.3 523,664 + -1.9 523,676 + -1.1 523,681 + -1.4 523,689 - -1.5 523,707 - -2.7 523,743 - +0.2 523,750 + -2.3 523,814 + PGA1_c05280 0.11 -0.5 523,852 + PGA1_c05280 0.14 -1.3 523,887 + PGA1_c05280 0.17 -0.9 523,887 + PGA1_c05280 0.17 -1.9 523,895 - PGA1_c05280 0.17 -2.4 523,936 - PGA1_c05280 0.20 -1.8 523,957 + PGA1_c05280 0.22 -2.0 523,957 + PGA1_c05280 0.22 -3.6 523,974 + PGA1_c05280 0.23 -0.3 523,986 - PGA1_c05280 0.24 -1.5 524,113 + PGA1_c05280 0.34 -0.9 524,192 + PGA1_c05280 0.40 -1.7 524,192 + PGA1_c05280 0.40 -0.9 524,193 + PGA1_c05280 0.40 -1.7 524,200 - PGA1_c05280 0.41 -1.7 524,220 - PGA1_c05280 0.43 -2.1 524,235 + PGA1_c05280 0.44 -3.0 524,246 - PGA1_c05280 0.45 -0.3 524,288 + PGA1_c05280 0.48 +0.3 524,288 + PGA1_c05280 0.48 -0.3 524,309 - PGA1_c05280 0.49 -1.8 524,347 + PGA1_c05280 0.52 -1.3 524,355 - PGA1_c05280 0.53 -0.0 524,355 - PGA1_c05280 0.53 -4.0 524,400 + PGA1_c05280 0.56 -0.9 524,400 + PGA1_c05280 0.56 -2.5 524,410 + PGA1_c05280 0.57 -1.3 524,436 - PGA1_c05280 0.59 -0.7 524,463 + PGA1_c05280 0.61 -2.1 524,464 + PGA1_c05280 0.61 -2.1 524,571 - PGA1_c05280 0.70 -3.3 524,578 + PGA1_c05280 0.70 -1.3 524,578 + PGA1_c05280 0.70 -0.8
Or see this region's nucleotide sequence