Experiment: m.b. Thallium(I) acetate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05220 and PGA1_c05230 are separated by 111 nucleotides PGA1_c05230 and PGA1_c05240 are separated by 327 nucleotides
PGA1_c05220: PGA1_c05220 - putative sn-glycerol-3-phosphate import ATP-binding protein UgpC, at 515,556 to 516,674
_c05220
PGA1_c05230: PGA1_c05230 - ABC transporter, extracellular solute-binding protein, at 516,786 to 518,519
_c05230
PGA1_c05240: PGA1_c05240 - Predicted N6-adenine-specific DNA methylase, at 518,847 to 519,977
_c05240
Position (kb) 516
517
518
519 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 515.800 kb on + strand, within PGA1_c05220 at 515.862 kb on + strand, within PGA1_c05220 at 515.870 kb on - strand, within PGA1_c05220 at 515.882 kb on + strand, within PGA1_c05220 at 515.887 kb on + strand, within PGA1_c05220 at 515.887 kb on + strand, within PGA1_c05220 at 515.887 kb on + strand, within PGA1_c05220 at 515.887 kb on + strand, within PGA1_c05220 at 515.887 kb on + strand, within PGA1_c05220 at 515.887 kb on + strand, within PGA1_c05220 at 515.895 kb on - strand, within PGA1_c05220 at 515.895 kb on - strand, within PGA1_c05220 at 515.948 kb on + strand, within PGA1_c05220 at 515.953 kb on + strand, within PGA1_c05220 at 515.956 kb on - strand, within PGA1_c05220 at 516.004 kb on + strand, within PGA1_c05220 at 516.010 kb on + strand, within PGA1_c05220 at 516.018 kb on - strand, within PGA1_c05220 at 516.039 kb on - strand, within PGA1_c05220 at 516.077 kb on + strand, within PGA1_c05220 at 516.204 kb on - strand, within PGA1_c05220 at 516.209 kb on - strand, within PGA1_c05220 at 516.209 kb on - strand, within PGA1_c05220 at 516.219 kb on + strand, within PGA1_c05220 at 516.219 kb on + strand, within PGA1_c05220 at 516.257 kb on + strand, within PGA1_c05220 at 516.372 kb on - strand, within PGA1_c05220 at 516.431 kb on + strand, within PGA1_c05220 at 516.441 kb on - strand, within PGA1_c05220 at 516.587 kb on + strand at 516.592 kb on + strand at 516.711 kb on - strand at 516.751 kb on + strand at 516.768 kb on + strand at 516.783 kb on + strand at 516.783 kb on - strand at 516.791 kb on - strand at 516.815 kb on + strand at 516.829 kb on + strand at 516.837 kb on - strand at 516.945 kb on - strand at 516.958 kb on - strand at 516.962 kb on + strand, within PGA1_c05230 at 516.969 kb on + strand, within PGA1_c05230 at 516.970 kb on - strand, within PGA1_c05230 at 517.002 kb on + strand, within PGA1_c05230 at 517.002 kb on + strand, within PGA1_c05230 at 517.033 kb on + strand, within PGA1_c05230 at 517.041 kb on - strand, within PGA1_c05230 at 517.060 kb on - strand, within PGA1_c05230 at 517.070 kb on - strand, within PGA1_c05230 at 517.073 kb on + strand, within PGA1_c05230 at 517.073 kb on + strand, within PGA1_c05230 at 517.073 kb on + strand, within PGA1_c05230 at 517.091 kb on + strand, within PGA1_c05230 at 517.110 kb on - strand, within PGA1_c05230 at 517.173 kb on + strand, within PGA1_c05230 at 517.180 kb on - strand, within PGA1_c05230 at 517.198 kb on - strand, within PGA1_c05230 at 517.212 kb on + strand, within PGA1_c05230 at 517.212 kb on + strand, within PGA1_c05230 at 517.220 kb on - strand, within PGA1_c05230 at 517.246 kb on + strand, within PGA1_c05230 at 517.246 kb on + strand, within PGA1_c05230 at 517.246 kb on + strand, within PGA1_c05230 at 517.246 kb on + strand, within PGA1_c05230 at 517.254 kb on - strand, within PGA1_c05230 at 517.254 kb on - strand, within PGA1_c05230 at 517.254 kb on - strand, within PGA1_c05230 at 517.254 kb on - strand, within PGA1_c05230 at 517.254 kb on - strand, within PGA1_c05230 at 517.256 kb on - strand, within PGA1_c05230 at 517.318 kb on + strand, within PGA1_c05230 at 517.365 kb on + strand, within PGA1_c05230 at 517.378 kb on - strand, within PGA1_c05230 at 517.503 kb on - strand, within PGA1_c05230 at 517.505 kb on + strand, within PGA1_c05230 at 517.505 kb on + strand, within PGA1_c05230 at 517.513 kb on - strand, within PGA1_c05230 at 517.590 kb on - strand, within PGA1_c05230 at 517.761 kb on - strand, within PGA1_c05230 at 517.769 kb on + strand, within PGA1_c05230 at 517.826 kb on + strand, within PGA1_c05230 at 517.857 kb on + strand, within PGA1_c05230 at 517.878 kb on + strand, within PGA1_c05230 at 517.878 kb on - strand, within PGA1_c05230 at 517.886 kb on + strand, within PGA1_c05230 at 517.900 kb on - strand, within PGA1_c05230 at 517.931 kb on - strand, within PGA1_c05230 at 517.931 kb on - strand, within PGA1_c05230 at 517.960 kb on + strand, within PGA1_c05230 at 517.960 kb on + strand, within PGA1_c05230 at 517.968 kb on - strand, within PGA1_c05230 at 518.017 kb on + strand, within PGA1_c05230 at 518.017 kb on + strand, within PGA1_c05230 at 518.017 kb on + strand, within PGA1_c05230 at 518.017 kb on + strand, within PGA1_c05230 at 518.017 kb on + strand, within PGA1_c05230 at 518.025 kb on - strand, within PGA1_c05230 at 518.025 kb on - strand, within PGA1_c05230 at 518.025 kb on - strand, within PGA1_c05230 at 518.025 kb on - strand, within PGA1_c05230 at 518.025 kb on - strand, within PGA1_c05230 at 518.025 kb on - strand, within PGA1_c05230 at 518.025 kb on - strand, within PGA1_c05230 at 518.032 kb on + strand, within PGA1_c05230 at 518.040 kb on - strand, within PGA1_c05230 at 518.072 kb on - strand, within PGA1_c05230 at 518.097 kb on + strand, within PGA1_c05230 at 518.131 kb on + strand, within PGA1_c05230 at 518.139 kb on - strand, within PGA1_c05230 at 518.149 kb on - strand, within PGA1_c05230 at 518.149 kb on - strand, within PGA1_c05230 at 518.186 kb on + strand, within PGA1_c05230 at 518.193 kb on + strand, within PGA1_c05230 at 518.193 kb on + strand, within PGA1_c05230 at 518.193 kb on + strand, within PGA1_c05230 at 518.201 kb on - strand, within PGA1_c05230 at 518.201 kb on - strand, within PGA1_c05230 at 518.201 kb on - strand, within PGA1_c05230 at 518.201 kb on - strand, within PGA1_c05230 at 518.201 kb on - strand, within PGA1_c05230 at 518.211 kb on - strand, within PGA1_c05230 at 518.211 kb on - strand, within PGA1_c05230 at 518.211 kb on - strand, within PGA1_c05230 at 518.229 kb on + strand, within PGA1_c05230 at 518.243 kb on + strand, within PGA1_c05230 at 518.274 kb on + strand, within PGA1_c05230 at 518.274 kb on + strand, within PGA1_c05230 at 518.274 kb on + strand, within PGA1_c05230 at 518.311 kb on + strand, within PGA1_c05230 at 518.311 kb on + strand, within PGA1_c05230 at 518.311 kb on + strand, within PGA1_c05230 at 518.338 kb on + strand, within PGA1_c05230 at 518.338 kb on + strand, within PGA1_c05230 at 518.338 kb on + strand, within PGA1_c05230 at 518.338 kb on + strand, within PGA1_c05230 at 518.338 kb on + strand, within PGA1_c05230 at 518.346 kb on - strand at 518.346 kb on - strand at 518.346 kb on - strand at 518.346 kb on - strand at 518.346 kb on - strand at 518.346 kb on - strand at 518.348 kb on + strand at 518.355 kb on - strand at 518.356 kb on - strand at 518.356 kb on - strand at 518.397 kb on + strand at 518.397 kb on + strand at 518.397 kb on + strand at 518.400 kb on - strand at 518.454 kb on + strand at 518.458 kb on - strand at 518.462 kb on - strand at 518.512 kb on - strand at 518.536 kb on + strand at 518.536 kb on + strand at 518.544 kb on - strand at 518.583 kb on + strand at 518.591 kb on - strand at 518.680 kb on - strand at 518.693 kb on + strand at 518.694 kb on - strand at 518.701 kb on - strand at 518.731 kb on + strand at 518.803 kb on + strand at 518.838 kb on + strand at 518.898 kb on + strand at 518.967 kb on + strand, within PGA1_c05240 at 518.976 kb on - strand, within PGA1_c05240 at 519.024 kb on + strand, within PGA1_c05240 at 519.041 kb on + strand, within PGA1_c05240 at 519.058 kb on + strand, within PGA1_c05240 at 519.058 kb on + strand, within PGA1_c05240 at 519.066 kb on - strand, within PGA1_c05240 at 519.113 kb on + strand, within PGA1_c05240 at 519.113 kb on + strand, within PGA1_c05240 at 519.118 kb on + strand, within PGA1_c05240 at 519.134 kb on - strand, within PGA1_c05240 at 519.206 kb on + strand, within PGA1_c05240 at 519.206 kb on + strand, within PGA1_c05240 at 519.214 kb on - strand, within PGA1_c05240 at 519.214 kb on - strand, within PGA1_c05240 at 519.233 kb on + strand, within PGA1_c05240 at 519.256 kb on + strand, within PGA1_c05240 at 519.264 kb on - strand, within PGA1_c05240 at 519.264 kb on - strand, within PGA1_c05240 at 519.264 kb on - strand, within PGA1_c05240 at 519.264 kb on - strand, within PGA1_c05240 at 519.273 kb on + strand, within PGA1_c05240 at 519.306 kb on - strand, within PGA1_c05240 at 519.328 kb on - strand, within PGA1_c05240 at 519.342 kb on + strand, within PGA1_c05240 at 519.347 kb on + strand, within PGA1_c05240 at 519.434 kb on - strand, within PGA1_c05240 at 519.455 kb on + strand, within PGA1_c05240
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.002 mg/ml remove 515,800 + PGA1_c05220 0.22 +0.9 515,862 + PGA1_c05220 0.27 +0.4 515,870 - PGA1_c05220 0.28 +1.5 515,882 + PGA1_c05220 0.29 +0.3 515,887 + PGA1_c05220 0.30 -0.2 515,887 + PGA1_c05220 0.30 -1.3 515,887 + PGA1_c05220 0.30 +1.1 515,887 + PGA1_c05220 0.30 -0.5 515,887 + PGA1_c05220 0.30 -1.0 515,887 + PGA1_c05220 0.30 -0.2 515,895 - PGA1_c05220 0.30 +0.3 515,895 - PGA1_c05220 0.30 -0.4 515,948 + PGA1_c05220 0.35 +0.7 515,953 + PGA1_c05220 0.35 +0.2 515,956 - PGA1_c05220 0.36 +0.8 516,004 + PGA1_c05220 0.40 -0.1 516,010 + PGA1_c05220 0.41 -0.4 516,018 - PGA1_c05220 0.41 -0.1 516,039 - PGA1_c05220 0.43 +0.1 516,077 + PGA1_c05220 0.47 -0.4 516,204 - PGA1_c05220 0.58 -0.7 516,209 - PGA1_c05220 0.58 +0.5 516,209 - PGA1_c05220 0.58 +0.3 516,219 + PGA1_c05220 0.59 +0.4 516,219 + PGA1_c05220 0.59 -0.5 516,257 + PGA1_c05220 0.63 -0.9 516,372 - PGA1_c05220 0.73 -0.4 516,431 + PGA1_c05220 0.78 +0.7 516,441 - PGA1_c05220 0.79 +0.5 516,587 + -0.5 516,592 + -1.1 516,711 - -0.3 516,751 + -0.7 516,768 + -1.2 516,783 + -1.3 516,783 - +1.1 516,791 - -0.1 516,815 + +1.1 516,829 + +1.7 516,837 - +0.7 516,945 - +0.0 516,958 - -0.9 516,962 + PGA1_c05230 0.10 -0.6 516,969 + PGA1_c05230 0.11 +1.5 516,970 - PGA1_c05230 0.11 +0.2 517,002 + PGA1_c05230 0.12 +0.1 517,002 + PGA1_c05230 0.12 -0.6 517,033 + PGA1_c05230 0.14 -0.9 517,041 - PGA1_c05230 0.15 -0.2 517,060 - PGA1_c05230 0.16 -1.1 517,070 - PGA1_c05230 0.16 +0.5 517,073 + PGA1_c05230 0.17 -0.1 517,073 + PGA1_c05230 0.17 -1.3 517,073 + PGA1_c05230 0.17 +1.0 517,091 + PGA1_c05230 0.18 +0.5 517,110 - PGA1_c05230 0.19 +0.7 517,173 + PGA1_c05230 0.22 +0.5 517,180 - PGA1_c05230 0.23 +1.7 517,198 - PGA1_c05230 0.24 +0.3 517,212 + PGA1_c05230 0.25 -0.7 517,212 + PGA1_c05230 0.25 +2.1 517,220 - PGA1_c05230 0.25 +0.5 517,246 + PGA1_c05230 0.27 +1.9 517,246 + PGA1_c05230 0.27 +0.3 517,246 + PGA1_c05230 0.27 -1.1 517,246 + PGA1_c05230 0.27 -0.8 517,254 - PGA1_c05230 0.27 +0.2 517,254 - PGA1_c05230 0.27 +1.3 517,254 - PGA1_c05230 0.27 -0.5 517,254 - PGA1_c05230 0.27 +0.3 517,254 - PGA1_c05230 0.27 -0.1 517,256 - PGA1_c05230 0.27 +1.7 517,318 + PGA1_c05230 0.31 -1.1 517,365 + PGA1_c05230 0.33 -0.2 517,378 - PGA1_c05230 0.34 +0.8 517,503 - PGA1_c05230 0.41 -0.3 517,505 + PGA1_c05230 0.41 -0.9 517,505 + PGA1_c05230 0.41 +0.3 517,513 - PGA1_c05230 0.42 +0.8 517,590 - PGA1_c05230 0.46 +1.2 517,761 - PGA1_c05230 0.56 +1.0 517,769 + PGA1_c05230 0.57 +0.7 517,826 + PGA1_c05230 0.60 +1.0 517,857 + PGA1_c05230 0.62 +1.7 517,878 + PGA1_c05230 0.63 +0.3 517,878 - PGA1_c05230 0.63 -0.2 517,886 + PGA1_c05230 0.63 +1.0 517,900 - PGA1_c05230 0.64 +0.4 517,931 - PGA1_c05230 0.66 +0.1 517,931 - PGA1_c05230 0.66 +1.1 517,960 + PGA1_c05230 0.68 +0.0 517,960 + PGA1_c05230 0.68 -0.2 517,968 - PGA1_c05230 0.68 +0.7 518,017 + PGA1_c05230 0.71 -0.2 518,017 + PGA1_c05230 0.71 +1.7 518,017 + PGA1_c05230 0.71 +0.6 518,017 + PGA1_c05230 0.71 -1.1 518,017 + PGA1_c05230 0.71 +0.5 518,025 - PGA1_c05230 0.71 -0.7 518,025 - PGA1_c05230 0.71 +0.9 518,025 - PGA1_c05230 0.71 -1.0 518,025 - PGA1_c05230 0.71 +0.3 518,025 - PGA1_c05230 0.71 +1.9 518,025 - PGA1_c05230 0.71 +3.0 518,025 - PGA1_c05230 0.71 +0.3 518,032 + PGA1_c05230 0.72 -0.3 518,040 - PGA1_c05230 0.72 +0.9 518,072 - PGA1_c05230 0.74 -0.8 518,097 + PGA1_c05230 0.76 +0.7 518,131 + PGA1_c05230 0.78 +0.5 518,139 - PGA1_c05230 0.78 +0.5 518,149 - PGA1_c05230 0.79 -0.7 518,149 - PGA1_c05230 0.79 +0.7 518,186 + PGA1_c05230 0.81 +0.1 518,193 + PGA1_c05230 0.81 +1.3 518,193 + PGA1_c05230 0.81 -1.1 518,193 + PGA1_c05230 0.81 -0.1 518,201 - PGA1_c05230 0.82 -0.7 518,201 - PGA1_c05230 0.82 +3.0 518,201 - PGA1_c05230 0.82 +0.3 518,201 - PGA1_c05230 0.82 -0.4 518,201 - PGA1_c05230 0.82 +0.2 518,211 - PGA1_c05230 0.82 -0.6 518,211 - PGA1_c05230 0.82 -1.1 518,211 - PGA1_c05230 0.82 +0.2 518,229 + PGA1_c05230 0.83 +0.7 518,243 + PGA1_c05230 0.84 -0.5 518,274 + PGA1_c05230 0.86 +0.7 518,274 + PGA1_c05230 0.86 +0.1 518,274 + PGA1_c05230 0.86 +0.7 518,311 + PGA1_c05230 0.88 +1.3 518,311 + PGA1_c05230 0.88 +1.9 518,311 + PGA1_c05230 0.88 +2.5 518,338 + PGA1_c05230 0.90 +0.1 518,338 + PGA1_c05230 0.90 +1.7 518,338 + PGA1_c05230 0.90 -0.6 518,338 + PGA1_c05230 0.90 -0.2 518,338 + PGA1_c05230 0.90 +0.3 518,346 - +0.3 518,346 - -0.3 518,346 - -0.1 518,346 - -0.0 518,346 - +0.7 518,346 - +0.5 518,348 + +0.4 518,355 - -0.1 518,356 - +0.5 518,356 - -1.2 518,397 + +2.0 518,397 + +0.1 518,397 + +1.2 518,400 - +1.3 518,454 + +0.4 518,458 - -1.2 518,462 - +0.8 518,512 - +0.7 518,536 + +0.1 518,536 + +0.8 518,544 - +1.1 518,583 + -0.3 518,591 - +1.4 518,680 - -0.1 518,693 + +2.3 518,694 - -0.7 518,701 - +1.9 518,731 + +0.8 518,803 + +1.3 518,838 + +0.2 518,898 + +1.8 518,967 + PGA1_c05240 0.11 -0.2 518,976 - PGA1_c05240 0.11 -0.2 519,024 + PGA1_c05240 0.16 -1.8 519,041 + PGA1_c05240 0.17 -1.7 519,058 + PGA1_c05240 0.19 +0.7 519,058 + PGA1_c05240 0.19 -0.0 519,066 - PGA1_c05240 0.19 -1.1 519,113 + PGA1_c05240 0.24 -0.1 519,113 + PGA1_c05240 0.24 +0.4 519,118 + PGA1_c05240 0.24 +0.2 519,134 - PGA1_c05240 0.25 +1.8 519,206 + PGA1_c05240 0.32 -0.6 519,206 + PGA1_c05240 0.32 +0.7 519,214 - PGA1_c05240 0.32 +0.1 519,214 - PGA1_c05240 0.32 -0.3 519,233 + PGA1_c05240 0.34 +0.9 519,256 + PGA1_c05240 0.36 -0.2 519,264 - PGA1_c05240 0.37 -0.3 519,264 - PGA1_c05240 0.37 -0.5 519,264 - PGA1_c05240 0.37 -1.1 519,264 - PGA1_c05240 0.37 -0.2 519,273 + PGA1_c05240 0.38 +0.0 519,306 - PGA1_c05240 0.41 -1.0 519,328 - PGA1_c05240 0.43 +1.7 519,342 + PGA1_c05240 0.44 +0.1 519,347 + PGA1_c05240 0.44 -1.9 519,434 - PGA1_c05240 0.52 +0.2 519,455 + PGA1_c05240 0.54 -1.4
Or see this region's nucleotide sequence