Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_65p00030

Experiment: m.b. Thallium(I) acetate 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_65p00020 and PGA1_65p00030 overlap by 4 nucleotidesPGA1_65p00030 and PGA1_65p00040 are separated by 162 nucleotides PGA1_65p00020: PGA1_65p00020 - putative type I secretion membrane fusion protein, at 1,376 to 2,779 _65p00020 PGA1_65p00030: PGA1_65p00030 - putative type I secretion system ATPase, at 2,776 to 4,539 _65p00030 PGA1_65p00040: PGA1_65p00040 - RTX toxins and related Ca2+-binding proteins, at 4,702 to 7,215 _65p00040 Position (kb) 2 3 4 5Strain fitness (log2 ratio) -1 0 1 2 3at 1.785 kb on - strand, within PGA1_65p00020at 1.987 kb on + strand, within PGA1_65p00020at 1.989 kb on - strand, within PGA1_65p00020at 2.669 kb on - strandat 2.683 kb on + strandat 2.683 kb on + strandat 2.774 kb on + strandat 2.856 kb on + strandat 2.875 kb on - strandat 3.023 kb on - strand, within PGA1_65p00030at 3.153 kb on - strand, within PGA1_65p00030at 3.255 kb on + strand, within PGA1_65p00030at 3.307 kb on + strand, within PGA1_65p00030at 3.433 kb on - strand, within PGA1_65p00030at 3.461 kb on + strand, within PGA1_65p00030at 3.512 kb on + strand, within PGA1_65p00030at 3.545 kb on + strand, within PGA1_65p00030at 3.928 kb on + strand, within PGA1_65p00030at 3.937 kb on - strand, within PGA1_65p00030at 4.047 kb on + strand, within PGA1_65p00030at 4.129 kb on + strand, within PGA1_65p00030at 4.318 kb on + strand, within PGA1_65p00030at 4.402 kb on + strandat 4.542 kb on - strandat 4.556 kb on - strandat 4.607 kb on + strandat 4.657 kb on - strandat 4.936 kb on + strandat 4.969 kb on + strand, within PGA1_65p00040at 5.028 kb on - strand, within PGA1_65p00040at 5.028 kb on - strandat 5.134 kb on - strand, within PGA1_65p00040at 5.289 kb on - strandat 5.317 kb on - strand, within PGA1_65p00040at 5.428 kb on + strand, within PGA1_65p00040at 5.497 kb on + strand, within PGA1_65p00040

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.002 mg/ml
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1,785 - PGA1_65p00020 0.29 -0.6
1,987 + PGA1_65p00020 0.44 -0.3
1,989 - PGA1_65p00020 0.44 +3.3
2,669 - +1.2
2,683 + -1.6
2,683 + +1.7
2,774 + +1.7
2,856 + +0.7
2,875 - +0.7
3,023 - PGA1_65p00030 0.14 +1.7
3,153 - PGA1_65p00030 0.21 +1.2
3,255 + PGA1_65p00030 0.27 +0.4
3,307 + PGA1_65p00030 0.30 +0.7
3,433 - PGA1_65p00030 0.37 +0.1
3,461 + PGA1_65p00030 0.39 +0.4
3,512 + PGA1_65p00030 0.42 +1.1
3,545 + PGA1_65p00030 0.44 +1.2
3,928 + PGA1_65p00030 0.65 +1.1
3,937 - PGA1_65p00030 0.66 +0.9
4,047 + PGA1_65p00030 0.72 +0.7
4,129 + PGA1_65p00030 0.77 -1.5
4,318 + PGA1_65p00030 0.87 +0.5
4,402 + +1.4
4,542 - +3.3
4,556 - +0.7
4,607 + +2.7
4,657 - -1.3
4,936 + -0.1
4,969 + PGA1_65p00040 0.11 +1.4
5,028 - PGA1_65p00040 0.13 +1.4
5,028 - +0.1
5,134 - PGA1_65p00040 0.17 -1.6
5,289 - +0.1
5,317 - PGA1_65p00040 0.24 +0.5
5,428 + PGA1_65p00040 0.29 +0.7
5,497 + PGA1_65p00040 0.32 +0.7

Or see this region's nucleotide sequence