Experiment: m.b. Thallium(I) acetate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01140 and PGA1_262p01150 are separated by 139 nucleotides PGA1_262p01150 and PGA1_262p01160 overlap by 30 nucleotides PGA1_262p01160 and PGA1_262p01165 are separated by 59 nucleotides PGA1_262p01165 and PGA1_262p01170 are separated by 118 nucleotides
PGA1_262p01140: PGA1_262p01140 - RTX toxins and related Ca2+-binding proteins, at 122,258 to 127,435
_262p01140
PGA1_262p01150: PGA1_262p01150 - hypothetical protein, at 127,575 to 127,769
_262p01150
PGA1_262p01160: PGA1_262p01160 - Uncharacterized iron-regulated membrane protein, at 127,740 to 129,128
_262p01160
PGA1_262p01165: PGA1_262p01165 - hypothetical protein, at 129,188 to 129,568
_262p01165
PGA1_262p01170: PGA1_262p01170 - putative nnrS protein, at 129,687 to 130,910
_262p01170
Position (kb) 127
128
129
130 Strain fitness (log2 ratio) -2
-1
0
1
2 at 126.753 kb on + strand, within PGA1_262p01140 at 126.980 kb on + strand at 127.276 kb on + strand at 127.359 kb on + strand at 127.385 kb on - strand at 127.385 kb on - strand at 127.411 kb on + strand at 127.419 kb on - strand at 127.470 kb on - strand at 127.518 kb on + strand at 127.647 kb on + strand, within PGA1_262p01150 at 127.959 kb on + strand, within PGA1_262p01160 at 128.015 kb on + strand, within PGA1_262p01160 at 128.015 kb on + strand, within PGA1_262p01160 at 128.018 kb on + strand, within PGA1_262p01160 at 128.023 kb on - strand, within PGA1_262p01160 at 128.150 kb on - strand, within PGA1_262p01160 at 128.410 kb on - strand, within PGA1_262p01160 at 128.503 kb on + strand, within PGA1_262p01160 at 128.574 kb on - strand, within PGA1_262p01160 at 128.762 kb on - strand, within PGA1_262p01160 at 128.773 kb on - strand, within PGA1_262p01160 at 128.907 kb on - strand, within PGA1_262p01160 at 129.123 kb on + strand at 129.124 kb on + strand at 129.167 kb on + strand at 129.176 kb on - strand at 129.190 kb on + strand at 129.238 kb on + strand, within PGA1_262p01165 at 129.371 kb on - strand, within PGA1_262p01165 at 129.516 kb on - strand, within PGA1_262p01165 at 129.516 kb on - strand, within PGA1_262p01165 at 129.582 kb on - strand at 129.643 kb on - strand at 129.735 kb on - strand at 129.740 kb on - strand at 129.740 kb on - strand at 129.783 kb on - strand at 129.802 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.002 mg/ml remove 126,753 + PGA1_262p01140 0.87 -1.1 126,980 + +1.1 127,276 + -0.1 127,359 + +0.9 127,385 - -0.1 127,385 - +0.2 127,411 + +0.6 127,419 - -0.7 127,470 - -0.9 127,518 + -0.1 127,647 + PGA1_262p01150 0.37 +1.0 127,959 + PGA1_262p01160 0.16 +0.9 128,015 + PGA1_262p01160 0.20 -1.7 128,015 + PGA1_262p01160 0.20 -1.1 128,018 + PGA1_262p01160 0.20 -2.3 128,023 - PGA1_262p01160 0.20 -0.9 128,150 - PGA1_262p01160 0.30 -0.1 128,410 - PGA1_262p01160 0.48 -0.3 128,503 + PGA1_262p01160 0.55 -0.1 128,574 - PGA1_262p01160 0.60 -0.3 128,762 - PGA1_262p01160 0.74 -1.7 128,773 - PGA1_262p01160 0.74 -0.1 128,907 - PGA1_262p01160 0.84 +0.3 129,123 + -1.1 129,124 + +0.6 129,167 + -1.6 129,176 - -0.4 129,190 + +0.6 129,238 + PGA1_262p01165 0.13 -0.3 129,371 - PGA1_262p01165 0.48 +1.5 129,516 - PGA1_262p01165 0.86 +1.3 129,516 - PGA1_262p01165 0.86 +1.3 129,582 - -0.1 129,643 - -0.6 129,735 - -0.9 129,740 - +0.6 129,740 - +1.9 129,783 - -0.7 129,802 - -0.1
Or see this region's nucleotide sequence