Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p01010

Experiment: m.b. Thallium(I) acetate 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p01000 and PGA1_262p01010 overlap by 4 nucleotidesPGA1_262p01010 and PGA1_262p01020 are separated by 5 nucleotidesPGA1_262p01020 and PGA1_262p01030 overlap by 4 nucleotides PGA1_262p01000: PGA1_262p01000 - dipeptide transport ATP-binding protein DppF, at 109,633 to 110,667 _262p01000 PGA1_262p01010: PGA1_262p01010 - dipeptide transport ATP-binding protein DppD, at 110,664 to 111,656 _262p01010 PGA1_262p01020: PGA1_262p01020 - dipeptide transport system permease protein DppC, at 111,662 to 112,609 _262p01020 PGA1_262p01030: PGA1_262p01030 - dipeptide transport system permease protein DppB, at 112,606 to 113,586 _262p01030 Position (kb) 110 111 112Strain fitness (log2 ratio) -2 -1 0 1 2at 109.763 kb on + strand, within PGA1_262p01000at 109.857 kb on - strand, within PGA1_262p01000at 109.892 kb on + strand, within PGA1_262p01000at 110.064 kb on - strand, within PGA1_262p01000at 110.268 kb on + strand, within PGA1_262p01000at 110.298 kb on + strand, within PGA1_262p01000at 110.309 kb on + strand, within PGA1_262p01000at 110.309 kb on + strand, within PGA1_262p01000at 110.592 kb on - strandat 110.598 kb on - strandat 110.730 kb on - strandat 110.900 kb on + strand, within PGA1_262p01010at 110.908 kb on + strand, within PGA1_262p01010at 110.908 kb on + strand, within PGA1_262p01010at 110.916 kb on - strand, within PGA1_262p01010at 110.961 kb on - strand, within PGA1_262p01010at 111.017 kb on + strand, within PGA1_262p01010at 111.017 kb on + strand, within PGA1_262p01010at 111.032 kb on + strand, within PGA1_262p01010at 111.101 kb on + strand, within PGA1_262p01010at 111.195 kb on - strand, within PGA1_262p01010at 111.230 kb on - strand, within PGA1_262p01010at 111.237 kb on + strand, within PGA1_262p01010at 111.552 kb on + strand, within PGA1_262p01010at 111.659 kb on + strandat 111.892 kb on + strand, within PGA1_262p01020at 111.900 kb on - strand, within PGA1_262p01020at 111.900 kb on - strand, within PGA1_262p01020at 111.900 kb on - strand, within PGA1_262p01020at 111.903 kb on - strand, within PGA1_262p01020at 111.972 kb on - strand, within PGA1_262p01020at 111.972 kb on - strand, within PGA1_262p01020at 111.972 kb on - strand, within PGA1_262p01020at 112.018 kb on + strand, within PGA1_262p01020at 112.018 kb on + strand, within PGA1_262p01020at 112.018 kb on + strand, within PGA1_262p01020at 112.026 kb on - strand, within PGA1_262p01020at 112.115 kb on + strand, within PGA1_262p01020at 112.127 kb on - strand, within PGA1_262p01020at 112.213 kb on + strand, within PGA1_262p01020at 112.311 kb on + strand, within PGA1_262p01020at 112.355 kb on + strand, within PGA1_262p01020at 112.399 kb on + strand, within PGA1_262p01020at 112.439 kb on - strand, within PGA1_262p01020at 112.506 kb on - strand, within PGA1_262p01020at 112.521 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.002 mg/ml
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109,763 + PGA1_262p01000 0.13 -0.8
109,857 - PGA1_262p01000 0.22 +0.9
109,892 + PGA1_262p01000 0.25 -0.3
110,064 - PGA1_262p01000 0.42 -0.7
110,268 + PGA1_262p01000 0.61 -1.7
110,298 + PGA1_262p01000 0.64 +0.5
110,309 + PGA1_262p01000 0.65 -0.4
110,309 + PGA1_262p01000 0.65 +1.3
110,592 - +1.1
110,598 - +0.4
110,730 - -2.1
110,900 + PGA1_262p01010 0.24 -2.1
110,908 + PGA1_262p01010 0.25 +1.2
110,908 + PGA1_262p01010 0.25 +1.1
110,916 - PGA1_262p01010 0.25 -0.6
110,961 - PGA1_262p01010 0.30 +0.3
111,017 + PGA1_262p01010 0.36 -1.1
111,017 + PGA1_262p01010 0.36 +1.9
111,032 + PGA1_262p01010 0.37 +2.4
111,101 + PGA1_262p01010 0.44 +1.6
111,195 - PGA1_262p01010 0.53 -1.1
111,230 - PGA1_262p01010 0.57 +0.3
111,237 + PGA1_262p01010 0.58 +1.2
111,552 + PGA1_262p01010 0.89 -1.2
111,659 + -1.4
111,892 + PGA1_262p01020 0.24 +1.5
111,900 - PGA1_262p01020 0.25 -1.0
111,900 - PGA1_262p01020 0.25 +1.1
111,900 - PGA1_262p01020 0.25 -1.1
111,903 - PGA1_262p01020 0.25 +0.9
111,972 - PGA1_262p01020 0.33 +0.1
111,972 - PGA1_262p01020 0.33 -1.0
111,972 - PGA1_262p01020 0.33 -0.7
112,018 + PGA1_262p01020 0.38 +0.3
112,018 + PGA1_262p01020 0.38 -2.3
112,018 + PGA1_262p01020 0.38 +0.1
112,026 - PGA1_262p01020 0.38 +0.3
112,115 + PGA1_262p01020 0.48 +0.7
112,127 - PGA1_262p01020 0.49 -1.9
112,213 + PGA1_262p01020 0.58 -0.1
112,311 + PGA1_262p01020 0.68 +0.6
112,355 + PGA1_262p01020 0.73 -0.4
112,399 + PGA1_262p01020 0.78 +0.3
112,439 - PGA1_262p01020 0.82 -0.7
112,506 - PGA1_262p01020 0.89 +1.1
112,521 + +1.7

Or see this region's nucleotide sequence