Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p00590

Experiment: m.b. Thallium(I) acetate 0.002 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_262p00580 and PGA1_262p00590 are separated by 34 nucleotidesPGA1_262p00590 and PGA1_262p00600 overlap by 4 nucleotides PGA1_262p00580: PGA1_262p00580 - putative polysaccharide biosynthesis/export protein, at 66,790 to 68,163 _262p00580 PGA1_262p00590: PGA1_262p00590 - Protein of unknown function (DUF2886)., at 68,198 to 68,857 _262p00590 PGA1_262p00600: PGA1_262p00600 - Bacterial putative lipoprotein (DUF940)., at 68,854 to 70,983 _262p00600 Position (kb) 68 69Strain fitness (log2 ratio) -2 -1 0 1at 67.205 kb on - strand, within PGA1_262p00580at 67.234 kb on + strand, within PGA1_262p00580at 67.240 kb on - strand, within PGA1_262p00580at 67.368 kb on - strand, within PGA1_262p00580at 67.368 kb on - strand, within PGA1_262p00580at 67.738 kb on - strand, within PGA1_262p00580at 67.875 kb on - strand, within PGA1_262p00580at 67.875 kb on - strand, within PGA1_262p00580at 67.875 kb on - strand, within PGA1_262p00580at 68.008 kb on - strand, within PGA1_262p00580at 68.008 kb on - strand, within PGA1_262p00580at 68.101 kb on - strandat 68.197 kb on + strandat 68.208 kb on + strandat 68.322 kb on - strand, within PGA1_262p00590at 68.423 kb on - strand, within PGA1_262p00590at 68.643 kb on - strand, within PGA1_262p00590at 68.709 kb on - strand, within PGA1_262p00590at 68.742 kb on - strand, within PGA1_262p00590at 68.771 kb on + strand, within PGA1_262p00590at 68.798 kb on - strandat 68.850 kb on + strandat 68.892 kb on + strandat 68.956 kb on + strandat 68.982 kb on - strandat 69.035 kb on + strandat 69.043 kb on - strandat 69.189 kb on + strand, within PGA1_262p00600at 69.293 kb on - strand, within PGA1_262p00600at 69.293 kb on - strand, within PGA1_262p00600at 69.293 kb on - strand, within PGA1_262p00600at 69.298 kb on - strand, within PGA1_262p00600at 69.367 kb on + strand, within PGA1_262p00600at 69.488 kb on + strand, within PGA1_262p00600at 69.502 kb on - strand, within PGA1_262p00600at 69.507 kb on - strand, within PGA1_262p00600at 69.509 kb on + strand, within PGA1_262p00600at 69.530 kb on + strand, within PGA1_262p00600at 69.738 kb on - strand, within PGA1_262p00600at 69.760 kb on - strand, within PGA1_262p00600

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.002 mg/ml
remove
67,205 - PGA1_262p00580 0.30 -2.3
67,234 + PGA1_262p00580 0.32 +0.5
67,240 - PGA1_262p00580 0.33 -1.3
67,368 - PGA1_262p00580 0.42 -0.9
67,368 - PGA1_262p00580 0.42 +0.5
67,738 - PGA1_262p00580 0.69 -2.4
67,875 - PGA1_262p00580 0.79 -1.8
67,875 - PGA1_262p00580 0.79 -1.1
67,875 - PGA1_262p00580 0.79 -0.1
68,008 - PGA1_262p00580 0.89 -1.7
68,008 - PGA1_262p00580 0.89 -0.3
68,101 - -2.0
68,197 + -1.4
68,208 + -1.7
68,322 - PGA1_262p00590 0.19 -0.3
68,423 - PGA1_262p00590 0.34 -0.9
68,643 - PGA1_262p00590 0.67 -0.7
68,709 - PGA1_262p00590 0.77 +0.3
68,742 - PGA1_262p00590 0.82 -0.9
68,771 + PGA1_262p00590 0.87 -0.4
68,798 - -1.7
68,850 + -1.4
68,892 + -1.1
68,956 + -1.4
68,982 - -0.7
69,035 + -1.4
69,043 - -2.6
69,189 + PGA1_262p00600 0.16 -1.1
69,293 - PGA1_262p00600 0.21 -1.4
69,293 - PGA1_262p00600 0.21 -0.1
69,293 - PGA1_262p00600 0.21 +0.5
69,298 - PGA1_262p00600 0.21 -0.1
69,367 + PGA1_262p00600 0.24 -1.4
69,488 + PGA1_262p00600 0.30 -0.5
69,502 - PGA1_262p00600 0.30 -0.7
69,507 - PGA1_262p00600 0.31 -0.1
69,509 + PGA1_262p00600 0.31 -2.3
69,530 + PGA1_262p00600 0.32 -1.1
69,738 - PGA1_262p00600 0.42 -0.9
69,760 - PGA1_262p00600 0.43 -2.1

Or see this region's nucleotide sequence