Experiment: m.b. Thallium(I) acetate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00050 and PGA1_262p00060 overlap by 8 nucleotides PGA1_262p00060 and PGA1_262p00070 overlap by 17 nucleotides
PGA1_262p00050: PGA1_262p00050 - putative glycosyl transferase, at 5,402 to 6,679
_262p00050
PGA1_262p00060: PGA1_262p00060 - putative glycosyl transferase, at 6,672 to 7,988
_262p00060
PGA1_262p00070: PGA1_262p00070 - Lipid A core - O-antigen ligase and related enzymes, at 7,972 to 9,258
_262p00070
Position (kb)
6
7
8 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5.846 kb on - strand, within PGA1_262p00050 at 6.031 kb on + strand, within PGA1_262p00050 at 6.039 kb on - strand, within PGA1_262p00050 at 6.088 kb on + strand, within PGA1_262p00050 at 6.137 kb on + strand, within PGA1_262p00050 at 6.139 kb on + strand, within PGA1_262p00050 at 6.287 kb on + strand, within PGA1_262p00050 at 6.295 kb on - strand, within PGA1_262p00050 at 6.340 kb on + strand, within PGA1_262p00050 at 6.347 kb on - strand, within PGA1_262p00050 at 6.374 kb on - strand, within PGA1_262p00050 at 6.420 kb on + strand, within PGA1_262p00050 at 6.428 kb on - strand, within PGA1_262p00050 at 6.774 kb on + strand at 6.972 kb on - strand, within PGA1_262p00060 at 6.979 kb on + strand, within PGA1_262p00060 at 6.993 kb on - strand, within PGA1_262p00060 at 7.096 kb on + strand, within PGA1_262p00060 at 7.263 kb on - strand, within PGA1_262p00060 at 7.297 kb on - strand, within PGA1_262p00060 at 7.772 kb on + strand, within PGA1_262p00060 at 7.813 kb on + strand, within PGA1_262p00060 at 7.909 kb on - strand at 7.932 kb on + strand at 7.973 kb on - strand at 7.990 kb on - strand at 8.050 kb on - strand at 8.166 kb on - strand, within PGA1_262p00070 at 8.231 kb on + strand, within PGA1_262p00070 at 8.262 kb on + strand, within PGA1_262p00070 at 8.287 kb on - strand, within PGA1_262p00070 at 8.394 kb on + strand, within PGA1_262p00070 at 8.408 kb on + strand, within PGA1_262p00070 at 8.481 kb on - strand, within PGA1_262p00070 at 8.481 kb on - strand, within PGA1_262p00070 at 8.516 kb on - strand, within PGA1_262p00070 at 8.895 kb on + strand, within PGA1_262p00070 at 8.914 kb on + strand, within PGA1_262p00070 at 8.922 kb on - strand, within PGA1_262p00070 at 8.926 kb on + strand, within PGA1_262p00070 at 8.981 kb on + strand, within PGA1_262p00070 at 8.984 kb on + strand, within PGA1_262p00070
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.002 mg/ml remove 5,846 - PGA1_262p00050 0.35 -0.7 6,031 + PGA1_262p00050 0.49 -1.3 6,039 - PGA1_262p00050 0.50 -0.3 6,088 + PGA1_262p00050 0.54 +0.2 6,137 + PGA1_262p00050 0.58 -0.1 6,139 + PGA1_262p00050 0.58 +0.9 6,287 + PGA1_262p00050 0.69 +1.5 6,295 - PGA1_262p00050 0.70 +0.7 6,340 + PGA1_262p00050 0.73 +0.4 6,347 - PGA1_262p00050 0.74 +0.5 6,374 - PGA1_262p00050 0.76 +0.3 6,420 + PGA1_262p00050 0.80 -1.1 6,428 - PGA1_262p00050 0.80 -2.3 6,774 + -0.6 6,972 - PGA1_262p00060 0.23 +0.1 6,979 + PGA1_262p00060 0.23 +0.9 6,993 - PGA1_262p00060 0.24 -1.6 7,096 + PGA1_262p00060 0.32 +0.3 7,263 - PGA1_262p00060 0.45 +1.6 7,297 - PGA1_262p00060 0.47 -0.3 7,772 + PGA1_262p00060 0.84 +1.3 7,813 + PGA1_262p00060 0.87 +1.1 7,909 - -0.1 7,932 + -0.1 7,973 - +2.5 7,990 - -0.3 8,050 - +0.1 8,166 - PGA1_262p00070 0.15 -2.3 8,231 + PGA1_262p00070 0.20 +0.4 8,262 + PGA1_262p00070 0.23 -2.3 8,287 - PGA1_262p00070 0.24 -0.9 8,394 + PGA1_262p00070 0.33 -2.1 8,408 + PGA1_262p00070 0.34 +0.9 8,481 - PGA1_262p00070 0.40 -0.4 8,481 - PGA1_262p00070 0.40 -2.6 8,516 - PGA1_262p00070 0.42 +0.3 8,895 + PGA1_262p00070 0.72 -1.9 8,914 + PGA1_262p00070 0.73 -0.7 8,922 - PGA1_262p00070 0.74 -0.4 8,926 + PGA1_262p00070 0.74 +0.6 8,981 + PGA1_262p00070 0.78 -0.9 8,984 + PGA1_262p00070 0.79 -1.4
Or see this region's nucleotide sequence