Experiment: m.b. Thallium(I) acetate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c35960 and PGA1_c35970 are separated by 43 nucleotides PGA1_c35970 and PGA1_c35980 are separated by 337 nucleotides PGA1_c35980 and PGA1_c35990 overlap by 1 nucleotides PGA1_c35990 and PGA1_c36000 are separated by 24 nucleotides
PGA1_c35960: PGA1_c35960 - nitrogen regulatory protein PtsN, at 3,765,541 to 3,766,005
_c35960
PGA1_c35970: PGA1_c35970 - putative sigma(54) modulation protein, at 3,766,049 to 3,766,612
_c35970
PGA1_c35980: PGA1_c35980 - lipopolysaccharide export system ATP-binding protein LptB, at 3,766,950 to 3,767,708
_c35980
PGA1_c35990: PGA1_c35990 - OstA-like protein, similar to lipopolysaccharide export system protein LptA, at 3,767,708 to 3,768,187
_c35990
PGA1_c36000: PGA1_c36000 - Protein of unknown function (DUF1239)., at 3,768,212 to 3,768,811
_c36000
Position (kb)
3766
3767
3768 Strain fitness (log2 ratio)
-2
-1
0
1 at 3765.974 kb on + strand at 3765.982 kb on - strand at 3766.033 kb on - strand at 3766.096 kb on + strand at 3766.127 kb on + strand, within PGA1_c35970 at 3766.168 kb on - strand, within PGA1_c35970 at 3766.171 kb on + strand, within PGA1_c35970 at 3766.236 kb on + strand, within PGA1_c35970 at 3766.256 kb on - strand, within PGA1_c35970 at 3766.266 kb on - strand, within PGA1_c35970 at 3766.266 kb on - strand, within PGA1_c35970 at 3766.266 kb on - strand, within PGA1_c35970 at 3766.266 kb on - strand, within PGA1_c35970 at 3766.270 kb on + strand, within PGA1_c35970 at 3766.271 kb on + strand, within PGA1_c35970 at 3766.310 kb on - strand, within PGA1_c35970 at 3766.316 kb on - strand, within PGA1_c35970 at 3766.427 kb on + strand, within PGA1_c35970 at 3766.427 kb on + strand, within PGA1_c35970 at 3766.427 kb on + strand, within PGA1_c35970 at 3766.427 kb on + strand, within PGA1_c35970 at 3766.434 kb on + strand, within PGA1_c35970 at 3766.435 kb on - strand, within PGA1_c35970 at 3766.435 kb on - strand, within PGA1_c35970 at 3766.442 kb on - strand, within PGA1_c35970 at 3766.442 kb on - strand, within PGA1_c35970 at 3766.498 kb on - strand, within PGA1_c35970 at 3766.507 kb on - strand, within PGA1_c35970 at 3766.562 kb on + strand at 3766.570 kb on - strand at 3766.588 kb on + strand at 3766.618 kb on - strand at 3766.618 kb on - strand at 3766.647 kb on + strand at 3766.647 kb on + strand at 3766.660 kb on - strand at 3766.660 kb on - strand at 3766.717 kb on + strand at 3766.720 kb on - strand at 3766.736 kb on + strand at 3766.761 kb on - strand at 3766.761 kb on - strand at 3766.799 kb on - strand at 3766.864 kb on - strand at 3766.875 kb on + strand at 3766.943 kb on + strand at 3766.948 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.002 mg/ml remove 3,765,974 + -2.3 3,765,982 - -1.5 3,766,033 - -1.2 3,766,096 + -1.1 3,766,127 + PGA1_c35970 0.14 +0.4 3,766,168 - PGA1_c35970 0.21 -0.1 3,766,171 + PGA1_c35970 0.22 +0.2 3,766,236 + PGA1_c35970 0.33 -0.4 3,766,256 - PGA1_c35970 0.37 -0.5 3,766,266 - PGA1_c35970 0.38 +0.2 3,766,266 - PGA1_c35970 0.38 -0.6 3,766,266 - PGA1_c35970 0.38 -0.7 3,766,266 - PGA1_c35970 0.38 -1.6 3,766,270 + PGA1_c35970 0.39 -0.4 3,766,271 + PGA1_c35970 0.39 -0.5 3,766,310 - PGA1_c35970 0.46 -0.8 3,766,316 - PGA1_c35970 0.47 +0.7 3,766,427 + PGA1_c35970 0.67 -1.1 3,766,427 + PGA1_c35970 0.67 -1.0 3,766,427 + PGA1_c35970 0.67 -1.0 3,766,427 + PGA1_c35970 0.67 -0.6 3,766,434 + PGA1_c35970 0.68 +0.5 3,766,435 - PGA1_c35970 0.68 -1.2 3,766,435 - PGA1_c35970 0.68 -0.7 3,766,442 - PGA1_c35970 0.70 -1.0 3,766,442 - PGA1_c35970 0.70 -0.2 3,766,498 - PGA1_c35970 0.80 -0.6 3,766,507 - PGA1_c35970 0.81 -0.5 3,766,562 + -0.2 3,766,570 - +0.8 3,766,588 + -0.2 3,766,618 - -0.5 3,766,618 - -1.2 3,766,647 + +1.7 3,766,647 + -1.8 3,766,660 - +0.7 3,766,660 - +0.3 3,766,717 + -0.3 3,766,720 - -0.1 3,766,736 + -0.4 3,766,761 - -0.3 3,766,761 - -1.2 3,766,799 - -1.5 3,766,864 - +0.5 3,766,875 + -1.0 3,766,943 + +0.2 3,766,948 + -1.8
Or see this region's nucleotide sequence