Experiment: m.b. Thallium(I) acetate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03360 and PGA1_c03365 are separated by 156 nucleotides PGA1_c03365 and PGA1_c03370 are separated by 163 nucleotides PGA1_c03370 and PGA1_c03380 are separated by 109 nucleotides
PGA1_c03360: PGA1_c03360 - Predicted O-methyltransferase, at 322,693 to 323,460
_c03360
PGA1_c03365: PGA1_c03365 - Uncharacterized small protein, at 323,617 to 323,796
_c03365
PGA1_c03370: PGA1_c03370 - hypothetical protein, at 323,960 to 324,166
_c03370
PGA1_c03380: PGA1_c03380 - putative glycine cleavage system transcriptional activator, at 324,276 to 325,157
_c03380
Position (kb) 323
324 Strain fitness (log2 ratio) -2
-1
0
1 at 322.620 kb on + strand at 322.627 kb on + strand at 322.628 kb on - strand at 322.643 kb on - strand at 322.649 kb on + strand at 322.700 kb on + strand at 323.059 kb on + strand, within PGA1_c03360 at 323.059 kb on + strand, within PGA1_c03360 at 323.082 kb on - strand, within PGA1_c03360 at 323.092 kb on - strand, within PGA1_c03360 at 323.092 kb on - strand, within PGA1_c03360 at 323.092 kb on - strand, within PGA1_c03360 at 323.242 kb on - strand, within PGA1_c03360 at 323.440 kb on + strand at 323.445 kb on + strand at 323.445 kb on + strand at 323.445 kb on + strand at 323.445 kb on + strand at 323.504 kb on - strand at 323.635 kb on - strand, within PGA1_c03365 at 323.685 kb on + strand, within PGA1_c03365 at 323.702 kb on + strand, within PGA1_c03365 at 323.777 kb on - strand, within PGA1_c03365 at 323.777 kb on - strand, within PGA1_c03365 at 323.777 kb on - strand, within PGA1_c03365 at 323.813 kb on + strand at 323.847 kb on - strand at 323.847 kb on - strand at 323.868 kb on + strand at 323.915 kb on - strand at 323.923 kb on + strand at 324.017 kb on + strand, within PGA1_c03370 at 324.017 kb on + strand, within PGA1_c03370 at 324.024 kb on + strand, within PGA1_c03370 at 324.087 kb on - strand, within PGA1_c03370 at 324.120 kb on + strand, within PGA1_c03370 at 324.128 kb on + strand, within PGA1_c03370 at 324.128 kb on + strand, within PGA1_c03370 at 324.199 kb on - strand at 324.222 kb on + strand at 324.227 kb on + strand at 324.232 kb on + strand at 324.235 kb on - strand at 324.235 kb on - strand at 324.235 kb on - strand at 324.235 kb on - strand at 324.240 kb on - strand at 324.277 kb on + strand at 324.278 kb on + strand at 324.278 kb on + strand at 324.278 kb on + strand at 324.286 kb on - strand at 324.286 kb on - strand at 324.286 kb on - strand at 324.339 kb on - strand at 324.370 kb on + strand, within PGA1_c03380 at 324.420 kb on - strand, within PGA1_c03380 at 324.434 kb on - strand, within PGA1_c03380 at 324.503 kb on - strand, within PGA1_c03380 at 324.503 kb on - strand, within PGA1_c03380 at 324.503 kb on - strand, within PGA1_c03380 at 324.503 kb on - strand, within PGA1_c03380 at 324.516 kb on + strand, within PGA1_c03380 at 324.549 kb on + strand, within PGA1_c03380 at 324.557 kb on - strand, within PGA1_c03380 at 324.557 kb on - strand, within PGA1_c03380 at 324.571 kb on + strand, within PGA1_c03380 at 324.573 kb on + strand, within PGA1_c03380 at 324.615 kb on - strand, within PGA1_c03380 at 324.618 kb on - strand, within PGA1_c03380 at 324.623 kb on - strand, within PGA1_c03380 at 324.680 kb on + strand, within PGA1_c03380 at 324.718 kb on + strand, within PGA1_c03380 at 324.726 kb on - strand, within PGA1_c03380 at 324.726 kb on - strand, within PGA1_c03380 at 324.726 kb on - strand, within PGA1_c03380 at 324.755 kb on + strand, within PGA1_c03380 at 324.763 kb on - strand, within PGA1_c03380 at 324.768 kb on + strand, within PGA1_c03380
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.002 mg/ml remove 322,620 + +0.2 322,627 + -0.4 322,628 - +0.2 322,643 - +0.3 322,649 + -0.2 322,700 + -2.6 323,059 + PGA1_c03360 0.48 -0.6 323,059 + PGA1_c03360 0.48 -0.9 323,082 - PGA1_c03360 0.51 -0.6 323,092 - PGA1_c03360 0.52 -0.3 323,092 - PGA1_c03360 0.52 -1.3 323,092 - PGA1_c03360 0.52 -0.7 323,242 - PGA1_c03360 0.71 -0.6 323,440 + -1.6 323,445 + +0.4 323,445 + -0.3 323,445 + -1.4 323,445 + +0.6 323,504 - -0.2 323,635 - PGA1_c03365 0.10 -2.0 323,685 + PGA1_c03365 0.38 -0.3 323,702 + PGA1_c03365 0.47 -0.0 323,777 - PGA1_c03365 0.89 -0.7 323,777 - PGA1_c03365 0.89 -0.5 323,777 - PGA1_c03365 0.89 -0.9 323,813 + -0.1 323,847 - +0.9 323,847 - -0.3 323,868 + -0.2 323,915 - -1.3 323,923 + +0.1 324,017 + PGA1_c03370 0.28 -1.1 324,017 + PGA1_c03370 0.28 -2.4 324,024 + PGA1_c03370 0.31 -0.0 324,087 - PGA1_c03370 0.61 -1.3 324,120 + PGA1_c03370 0.77 +0.7 324,128 + PGA1_c03370 0.81 -0.3 324,128 + PGA1_c03370 0.81 +0.4 324,199 - -0.3 324,222 + -0.0 324,227 + +0.7 324,232 + -1.1 324,235 - -2.3 324,235 - -0.2 324,235 - +0.7 324,235 - -0.7 324,240 - +0.5 324,277 + +1.2 324,278 + +0.5 324,278 + -0.5 324,278 + +0.4 324,286 - -0.8 324,286 - +0.4 324,286 - +1.6 324,339 - -0.3 324,370 + PGA1_c03380 0.11 -1.2 324,420 - PGA1_c03380 0.16 +0.1 324,434 - PGA1_c03380 0.18 +0.1 324,503 - PGA1_c03380 0.26 -0.9 324,503 - PGA1_c03380 0.26 +0.7 324,503 - PGA1_c03380 0.26 -0.3 324,503 - PGA1_c03380 0.26 +0.1 324,516 + PGA1_c03380 0.27 +1.3 324,549 + PGA1_c03380 0.31 +1.7 324,557 - PGA1_c03380 0.32 -0.1 324,557 - PGA1_c03380 0.32 -0.4 324,571 + PGA1_c03380 0.33 +0.8 324,573 + PGA1_c03380 0.34 -0.2 324,615 - PGA1_c03380 0.38 -0.2 324,618 - PGA1_c03380 0.39 -0.6 324,623 - PGA1_c03380 0.39 -0.4 324,680 + PGA1_c03380 0.46 +1.1 324,718 + PGA1_c03380 0.50 -0.6 324,726 - PGA1_c03380 0.51 +0.1 324,726 - PGA1_c03380 0.51 +1.2 324,726 - PGA1_c03380 0.51 +0.7 324,755 + PGA1_c03380 0.54 -0.2 324,763 - PGA1_c03380 0.55 -2.4 324,768 + PGA1_c03380 0.56 -0.1
Or see this region's nucleotide sequence