Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c32280

Experiment: m.b. Thallium(I) acetate 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c32260 and PGA1_c32270 are separated by 12 nucleotidesPGA1_c32270 and PGA1_c32280 are separated by 66 nucleotidesPGA1_c32280 and PGA1_c32290 are separated by 116 nucleotidesPGA1_c32290 and PGA1_c32300 overlap by 4 nucleotides PGA1_c32260: PGA1_c32260 - putative integral membrane protein, at 3,383,211 to 3,384,728 _c32260 PGA1_c32270: PGA1_c32270 - hypothetical protein, at 3,384,741 to 3,385,280 _c32270 PGA1_c32280: PGA1_c32280 - Uncharacterized protein conserved in bacteria, at 3,385,347 to 3,386,291 _c32280 PGA1_c32290: PGA1_c32290 - HTH-type transcriptional regulator, IclR family, at 3,386,408 to 3,387,217 _c32290 PGA1_c32300: PGA1_c32300 - aminotransferase class-III, at 3,387,214 to 3,388,560 _c32300 Position (kb) 3385 3386 3387Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3384.353 kb on - strand, within PGA1_c32260at 3384.436 kb on + strand, within PGA1_c32260at 3384.444 kb on - strand, within PGA1_c32260at 3384.459 kb on + strand, within PGA1_c32260at 3384.492 kb on + strand, within PGA1_c32260at 3384.500 kb on - strand, within PGA1_c32260at 3384.500 kb on - strand, within PGA1_c32260at 3384.521 kb on + strand, within PGA1_c32260at 3384.521 kb on + strand, within PGA1_c32260at 3384.524 kb on - strand, within PGA1_c32260at 3384.550 kb on + strand, within PGA1_c32260at 3384.557 kb on + strand, within PGA1_c32260at 3384.560 kb on - strand, within PGA1_c32260at 3384.565 kb on - strand, within PGA1_c32260at 3384.582 kb on + strandat 3384.582 kb on + strandat 3384.605 kb on - strandat 3384.663 kb on + strandat 3384.669 kb on - strandat 3384.843 kb on + strand, within PGA1_c32270at 3384.957 kb on - strand, within PGA1_c32270at 3384.959 kb on - strand, within PGA1_c32270at 3384.988 kb on + strand, within PGA1_c32270at 3385.010 kb on - strand, within PGA1_c32270at 3385.012 kb on + strand, within PGA1_c32270at 3385.015 kb on - strand, within PGA1_c32270at 3385.019 kb on - strand, within PGA1_c32270at 3385.020 kb on - strand, within PGA1_c32270at 3385.060 kb on - strand, within PGA1_c32270at 3385.067 kb on + strand, within PGA1_c32270at 3385.111 kb on + strand, within PGA1_c32270at 3385.111 kb on + strand, within PGA1_c32270at 3385.111 kb on + strand, within PGA1_c32270at 3385.119 kb on - strand, within PGA1_c32270at 3385.119 kb on - strand, within PGA1_c32270at 3385.119 kb on - strand, within PGA1_c32270at 3385.119 kb on - strand, within PGA1_c32270at 3385.122 kb on + strand, within PGA1_c32270at 3385.144 kb on + strand, within PGA1_c32270at 3385.144 kb on + strand, within PGA1_c32270at 3385.152 kb on - strand, within PGA1_c32270at 3385.152 kb on - strand, within PGA1_c32270at 3385.152 kb on - strand, within PGA1_c32270at 3385.188 kb on - strand, within PGA1_c32270at 3385.202 kb on + strand, within PGA1_c32270at 3385.236 kb on + strandat 3385.254 kb on + strandat 3385.262 kb on - strandat 3385.332 kb on - strandat 3385.335 kb on + strandat 3385.339 kb on + strandat 3385.388 kb on - strandat 3385.393 kb on + strandat 3385.401 kb on - strandat 3385.429 kb on + strandat 3385.484 kb on + strand, within PGA1_c32280at 3385.524 kb on - strand, within PGA1_c32280at 3385.524 kb on - strand, within PGA1_c32280at 3385.576 kb on - strand, within PGA1_c32280at 3385.594 kb on - strand, within PGA1_c32280at 3385.625 kb on + strand, within PGA1_c32280at 3385.625 kb on + strand, within PGA1_c32280at 3385.666 kb on - strand, within PGA1_c32280at 3385.716 kb on + strand, within PGA1_c32280at 3385.731 kb on - strand, within PGA1_c32280at 3385.812 kb on - strand, within PGA1_c32280at 3385.892 kb on + strand, within PGA1_c32280at 3385.931 kb on - strand, within PGA1_c32280at 3385.960 kb on - strand, within PGA1_c32280at 3385.965 kb on - strand, within PGA1_c32280at 3386.049 kb on - strand, within PGA1_c32280at 3386.065 kb on + strand, within PGA1_c32280at 3386.159 kb on - strand, within PGA1_c32280at 3386.159 kb on - strand, within PGA1_c32280at 3386.163 kb on + strand, within PGA1_c32280at 3386.235 kb on + strandat 3386.411 kb on - strandat 3386.415 kb on - strandat 3386.446 kb on + strandat 3386.454 kb on - strandat 3386.454 kb on - strandat 3386.454 kb on - strandat 3386.480 kb on + strandat 3386.482 kb on + strandat 3386.490 kb on + strand, within PGA1_c32290at 3386.493 kb on - strand, within PGA1_c32290at 3386.617 kb on + strand, within PGA1_c32290at 3386.638 kb on + strand, within PGA1_c32290at 3386.646 kb on - strand, within PGA1_c32290at 3386.704 kb on - strand, within PGA1_c32290at 3386.763 kb on + strand, within PGA1_c32290at 3386.819 kb on - strand, within PGA1_c32290at 3386.838 kb on + strand, within PGA1_c32290at 3386.851 kb on + strand, within PGA1_c32290at 3386.926 kb on + strand, within PGA1_c32290at 3386.958 kb on + strand, within PGA1_c32290at 3386.958 kb on + strand, within PGA1_c32290at 3386.963 kb on + strand, within PGA1_c32290at 3387.004 kb on + strand, within PGA1_c32290at 3387.078 kb on - strand, within PGA1_c32290at 3387.093 kb on + strand, within PGA1_c32290at 3387.098 kb on + strand, within PGA1_c32290at 3387.103 kb on + strand, within PGA1_c32290at 3387.103 kb on + strand, within PGA1_c32290at 3387.111 kb on - strand, within PGA1_c32290at 3387.111 kb on - strand, within PGA1_c32290at 3387.111 kb on - strand, within PGA1_c32290at 3387.111 kb on - strand, within PGA1_c32290at 3387.157 kb on + strandat 3387.165 kb on - strandat 3387.175 kb on - strandat 3387.250 kb on + strandat 3387.272 kb on - strandat 3387.277 kb on + strandat 3387.282 kb on + strandat 3387.282 kb on + strandat 3387.285 kb on - strandat 3387.290 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.002 mg/ml
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3,384,353 - PGA1_c32260 0.75 -1.5
3,384,436 + PGA1_c32260 0.81 +0.1
3,384,444 - PGA1_c32260 0.81 -0.9
3,384,459 + PGA1_c32260 0.82 -0.7
3,384,492 + PGA1_c32260 0.84 -0.6
3,384,500 - PGA1_c32260 0.85 +0.6
3,384,500 - PGA1_c32260 0.85 -1.0
3,384,521 + PGA1_c32260 0.86 +0.5
3,384,521 + PGA1_c32260 0.86 -0.3
3,384,524 - PGA1_c32260 0.86 +0.7
3,384,550 + PGA1_c32260 0.88 +0.2
3,384,557 + PGA1_c32260 0.89 -1.2
3,384,560 - PGA1_c32260 0.89 -1.0
3,384,565 - PGA1_c32260 0.89 -1.5
3,384,582 + -0.0
3,384,582 + -0.7
3,384,605 - +0.7
3,384,663 + +0.0
3,384,669 - +0.4
3,384,843 + PGA1_c32270 0.19 -0.6
3,384,957 - PGA1_c32270 0.40 +1.0
3,384,959 - PGA1_c32270 0.40 -0.6
3,384,988 + PGA1_c32270 0.46 -0.5
3,385,010 - PGA1_c32270 0.50 +0.4
3,385,012 + PGA1_c32270 0.50 +0.9
3,385,015 - PGA1_c32270 0.51 +0.7
3,385,019 - PGA1_c32270 0.51 +0.9
3,385,020 - PGA1_c32270 0.52 +0.5
3,385,060 - PGA1_c32270 0.59 -2.9
3,385,067 + PGA1_c32270 0.60 -0.1
3,385,111 + PGA1_c32270 0.69 +0.7
3,385,111 + PGA1_c32270 0.69 +3.0
3,385,111 + PGA1_c32270 0.69 +0.5
3,385,119 - PGA1_c32270 0.70 +1.3
3,385,119 - PGA1_c32270 0.70 +0.7
3,385,119 - PGA1_c32270 0.70 -2.6
3,385,119 - PGA1_c32270 0.70 +1.1
3,385,122 + PGA1_c32270 0.71 -0.8
3,385,144 + PGA1_c32270 0.75 +1.1
3,385,144 + PGA1_c32270 0.75 -0.4
3,385,152 - PGA1_c32270 0.76 +1.7
3,385,152 - PGA1_c32270 0.76 -0.2
3,385,152 - PGA1_c32270 0.76 +0.1
3,385,188 - PGA1_c32270 0.83 -0.3
3,385,202 + PGA1_c32270 0.85 +0.2
3,385,236 + -0.8
3,385,254 + -1.6
3,385,262 - -0.0
3,385,332 - +1.2
3,385,335 + +0.5
3,385,339 + -0.2
3,385,388 - +1.1
3,385,393 + -0.7
3,385,401 - +0.3
3,385,429 + -0.2
3,385,484 + PGA1_c32280 0.14 -1.7
3,385,524 - PGA1_c32280 0.19 +1.1
3,385,524 - PGA1_c32280 0.19 +1.1
3,385,576 - PGA1_c32280 0.24 -0.3
3,385,594 - PGA1_c32280 0.26 -0.2
3,385,625 + PGA1_c32280 0.29 +0.9
3,385,625 + PGA1_c32280 0.29 +0.5
3,385,666 - PGA1_c32280 0.34 +2.5
3,385,716 + PGA1_c32280 0.39 -0.7
3,385,731 - PGA1_c32280 0.41 -0.5
3,385,812 - PGA1_c32280 0.49 +1.0
3,385,892 + PGA1_c32280 0.58 +0.1
3,385,931 - PGA1_c32280 0.62 +1.0
3,385,960 - PGA1_c32280 0.65 +0.0
3,385,965 - PGA1_c32280 0.65 +1.3
3,386,049 - PGA1_c32280 0.74 -1.3
3,386,065 + PGA1_c32280 0.76 +0.6
3,386,159 - PGA1_c32280 0.86 +1.0
3,386,159 - PGA1_c32280 0.86 -0.3
3,386,163 + PGA1_c32280 0.86 +0.4
3,386,235 + +0.1
3,386,411 - +0.3
3,386,415 - +0.1
3,386,446 + -0.5
3,386,454 - -1.3
3,386,454 - -0.7
3,386,454 - +0.0
3,386,480 + +0.2
3,386,482 + -1.2
3,386,490 + PGA1_c32290 0.10 -0.9
3,386,493 - PGA1_c32290 0.10 -1.5
3,386,617 + PGA1_c32290 0.26 +0.2
3,386,638 + PGA1_c32290 0.28 -1.6
3,386,646 - PGA1_c32290 0.29 +0.3
3,386,704 - PGA1_c32290 0.37 +1.1
3,386,763 + PGA1_c32290 0.44 +0.7
3,386,819 - PGA1_c32290 0.51 +0.9
3,386,838 + PGA1_c32290 0.53 +0.7
3,386,851 + PGA1_c32290 0.55 -0.0
3,386,926 + PGA1_c32290 0.64 -0.6
3,386,958 + PGA1_c32290 0.68 +0.6
3,386,958 + PGA1_c32290 0.68 -1.0
3,386,963 + PGA1_c32290 0.69 -0.5
3,387,004 + PGA1_c32290 0.74 +0.2
3,387,078 - PGA1_c32290 0.83 -0.6
3,387,093 + PGA1_c32290 0.85 +1.1
3,387,098 + PGA1_c32290 0.85 -0.2
3,387,103 + PGA1_c32290 0.86 -0.1
3,387,103 + PGA1_c32290 0.86 +0.3
3,387,111 - PGA1_c32290 0.87 +0.7
3,387,111 - PGA1_c32290 0.87 +0.6
3,387,111 - PGA1_c32290 0.87 +0.1
3,387,111 - PGA1_c32290 0.87 -2.8
3,387,157 + -0.9
3,387,165 - +1.9
3,387,175 - +0.1
3,387,250 + -1.2
3,387,272 - -0.3
3,387,277 + +0.0
3,387,282 + +1.0
3,387,282 + -1.5
3,387,285 - -1.9
3,387,290 - +0.6

Or see this region's nucleotide sequence