Strain Fitness in Marinobacter adhaerens HP15 around HP15_3027

Experiment: Glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3026 and HP15_3027 are separated by 29 nucleotidesHP15_3027 and HP15_3028 are separated by 99 nucleotides HP15_3026: HP15_3026 - TRAP dicarboxylate transporter, DctM subunit, at 3,170,051 to 3,171,550 _3026 HP15_3027: HP15_3027 - TRAP transporter, DctQ-like membrane protein, at 3,171,580 to 3,172,284 _3027 HP15_3028: HP15_3028 - TRAP-type D-lactate transporter, periplasmic component (from data), at 3,172,384 to 3,173,574 _3028 Position (kb) 3171 3172 3173Strain fitness (log2 ratio) -1 0 1at 3170.708 kb on - strand, within HP15_3026at 3170.739 kb on + strand, within HP15_3026at 3170.762 kb on + strand, within HP15_3026at 3170.839 kb on + strand, within HP15_3026at 3170.856 kb on - strand, within HP15_3026at 3170.866 kb on - strand, within HP15_3026at 3170.899 kb on + strand, within HP15_3026at 3171.038 kb on + strand, within HP15_3026at 3171.051 kb on + strand, within HP15_3026at 3171.063 kb on - strand, within HP15_3026at 3171.068 kb on - strand, within HP15_3026at 3171.098 kb on + strand, within HP15_3026at 3171.106 kb on - strand, within HP15_3026at 3171.120 kb on - strand, within HP15_3026at 3171.264 kb on + strand, within HP15_3026at 3171.299 kb on + strand, within HP15_3026at 3171.374 kb on - strand, within HP15_3026at 3171.478 kb on + strandat 3171.486 kb on - strandat 3171.557 kb on + strandat 3171.613 kb on - strandat 3171.692 kb on + strand, within HP15_3027at 3171.692 kb on + strand, within HP15_3027at 3171.692 kb on + strand, within HP15_3027at 3171.700 kb on - strand, within HP15_3027at 3171.700 kb on - strand, within HP15_3027at 3171.775 kb on - strand, within HP15_3027at 3171.858 kb on - strand, within HP15_3027at 3171.908 kb on + strand, within HP15_3027at 3172.030 kb on - strand, within HP15_3027at 3172.090 kb on + strand, within HP15_3027at 3172.236 kb on + strandat 3172.244 kb on - strandat 3172.320 kb on + strandat 3172.321 kb on + strandat 3172.391 kb on + strandat 3172.579 kb on - strand, within HP15_3028at 3172.597 kb on - strand, within HP15_3028at 3172.959 kb on + strand, within HP15_3028at 3173.021 kb on + strand, within HP15_3028at 3173.021 kb on + strand, within HP15_3028at 3173.024 kb on - strand, within HP15_3028at 3173.029 kb on - strand, within HP15_3028at 3173.029 kb on - strand, within HP15_3028at 3173.029 kb on - strand, within HP15_3028at 3173.117 kb on - strand, within HP15_3028at 3173.136 kb on + strand, within HP15_3028at 3173.162 kb on + strand, within HP15_3028at 3173.162 kb on + strand, within HP15_3028at 3173.170 kb on - strand, within HP15_3028at 3173.170 kb on - strand, within HP15_3028at 3173.172 kb on + strand, within HP15_3028at 3173.175 kb on - strand, within HP15_3028at 3173.175 kb on - strand, within HP15_3028at 3173.181 kb on + strand, within HP15_3028at 3173.181 kb on + strand, within HP15_3028at 3173.189 kb on - strand, within HP15_3028at 3173.211 kb on - strand, within HP15_3028at 3173.211 kb on - strand, within HP15_3028at 3173.213 kb on + strand, within HP15_3028at 3173.221 kb on - strand, within HP15_3028at 3173.221 kb on - strand, within HP15_3028

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol
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3,170,708 - HP15_3026 0.44 +0.2
3,170,739 + HP15_3026 0.46 +0.0
3,170,762 + HP15_3026 0.47 -0.9
3,170,839 + HP15_3026 0.53 -0.1
3,170,856 - HP15_3026 0.54 -1.4
3,170,866 - HP15_3026 0.54 -0.2
3,170,899 + HP15_3026 0.57 -0.1
3,171,038 + HP15_3026 0.66 -0.3
3,171,051 + HP15_3026 0.67 +0.3
3,171,063 - HP15_3026 0.67 -0.3
3,171,068 - HP15_3026 0.68 -0.2
3,171,098 + HP15_3026 0.70 +0.1
3,171,106 - HP15_3026 0.70 -1.2
3,171,120 - HP15_3026 0.71 +0.9
3,171,264 + HP15_3026 0.81 +0.5
3,171,299 + HP15_3026 0.83 -0.1
3,171,374 - HP15_3026 0.88 -0.3
3,171,478 + -0.5
3,171,486 - +0.9
3,171,557 + -0.9
3,171,613 - +0.5
3,171,692 + HP15_3027 0.16 -1.2
3,171,692 + HP15_3027 0.16 -0.3
3,171,692 + HP15_3027 0.16 -0.5
3,171,700 - HP15_3027 0.17 -0.1
3,171,700 - HP15_3027 0.17 -0.0
3,171,775 - HP15_3027 0.28 -1.1
3,171,858 - HP15_3027 0.39 -0.7
3,171,908 + HP15_3027 0.47 +0.1
3,172,030 - HP15_3027 0.64 -0.3
3,172,090 + HP15_3027 0.72 -0.1
3,172,236 + +0.2
3,172,244 - -0.1
3,172,320 + -1.1
3,172,321 + -1.5
3,172,391 + +0.4
3,172,579 - HP15_3028 0.16 +0.9
3,172,597 - HP15_3028 0.18 -0.7
3,172,959 + HP15_3028 0.48 -0.0
3,173,021 + HP15_3028 0.53 +0.2
3,173,021 + HP15_3028 0.53 -1.1
3,173,024 - HP15_3028 0.54 -0.0
3,173,029 - HP15_3028 0.54 -0.5
3,173,029 - HP15_3028 0.54 +0.9
3,173,029 - HP15_3028 0.54 -0.3
3,173,117 - HP15_3028 0.62 +1.5
3,173,136 + HP15_3028 0.63 -0.9
3,173,162 + HP15_3028 0.65 +0.5
3,173,162 + HP15_3028 0.65 +0.4
3,173,170 - HP15_3028 0.66 -0.4
3,173,170 - HP15_3028 0.66 -0.4
3,173,172 + HP15_3028 0.66 -0.1
3,173,175 - HP15_3028 0.66 -0.1
3,173,175 - HP15_3028 0.66 +0.2
3,173,181 + HP15_3028 0.67 -0.5
3,173,181 + HP15_3028 0.67 -0.9
3,173,189 - HP15_3028 0.68 -0.3
3,173,211 - HP15_3028 0.69 -0.3
3,173,211 - HP15_3028 0.69 -0.5
3,173,213 + HP15_3028 0.70 -0.4
3,173,221 - HP15_3028 0.70 -1.1
3,173,221 - HP15_3028 0.70 -0.6

Or see this region's nucleotide sequence