Experiment: Glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3026 and HP15_3027 are separated by 29 nucleotides HP15_3027 and HP15_3028 are separated by 99 nucleotides
HP15_3026: HP15_3026 - TRAP dicarboxylate transporter, DctM subunit, at 3,170,051 to 3,171,550
_3026
HP15_3027: HP15_3027 - TRAP transporter, DctQ-like membrane protein, at 3,171,580 to 3,172,284
_3027
HP15_3028: HP15_3028 - TRAP-type D-lactate transporter, periplasmic component (from data) , at 3,172,384 to 3,173,574
_3028
Position (kb)
3171
3172
3173 Strain fitness (log2 ratio)
-1
0
1 at 3170.708 kb on - strand, within HP15_3026 at 3170.739 kb on + strand, within HP15_3026 at 3170.762 kb on + strand, within HP15_3026 at 3170.839 kb on + strand, within HP15_3026 at 3170.856 kb on - strand, within HP15_3026 at 3170.866 kb on - strand, within HP15_3026 at 3170.899 kb on + strand, within HP15_3026 at 3171.038 kb on + strand, within HP15_3026 at 3171.051 kb on + strand, within HP15_3026 at 3171.063 kb on - strand, within HP15_3026 at 3171.068 kb on - strand, within HP15_3026 at 3171.098 kb on + strand, within HP15_3026 at 3171.106 kb on - strand, within HP15_3026 at 3171.120 kb on - strand, within HP15_3026 at 3171.264 kb on + strand, within HP15_3026 at 3171.299 kb on + strand, within HP15_3026 at 3171.374 kb on - strand, within HP15_3026 at 3171.478 kb on + strand at 3171.486 kb on - strand at 3171.557 kb on + strand at 3171.613 kb on - strand at 3171.692 kb on + strand, within HP15_3027 at 3171.692 kb on + strand, within HP15_3027 at 3171.692 kb on + strand, within HP15_3027 at 3171.700 kb on - strand, within HP15_3027 at 3171.700 kb on - strand, within HP15_3027 at 3171.775 kb on - strand, within HP15_3027 at 3171.858 kb on - strand, within HP15_3027 at 3171.908 kb on + strand, within HP15_3027 at 3172.030 kb on - strand, within HP15_3027 at 3172.090 kb on + strand, within HP15_3027 at 3172.236 kb on + strand at 3172.244 kb on - strand at 3172.320 kb on + strand at 3172.321 kb on + strand at 3172.391 kb on + strand at 3172.579 kb on - strand, within HP15_3028 at 3172.597 kb on - strand, within HP15_3028 at 3172.959 kb on + strand, within HP15_3028 at 3173.021 kb on + strand, within HP15_3028 at 3173.021 kb on + strand, within HP15_3028 at 3173.024 kb on - strand, within HP15_3028 at 3173.029 kb on - strand, within HP15_3028 at 3173.029 kb on - strand, within HP15_3028 at 3173.029 kb on - strand, within HP15_3028 at 3173.117 kb on - strand, within HP15_3028 at 3173.136 kb on + strand, within HP15_3028 at 3173.162 kb on + strand, within HP15_3028 at 3173.162 kb on + strand, within HP15_3028 at 3173.170 kb on - strand, within HP15_3028 at 3173.170 kb on - strand, within HP15_3028 at 3173.172 kb on + strand, within HP15_3028 at 3173.175 kb on - strand, within HP15_3028 at 3173.175 kb on - strand, within HP15_3028 at 3173.181 kb on + strand, within HP15_3028 at 3173.181 kb on + strand, within HP15_3028 at 3173.189 kb on - strand, within HP15_3028 at 3173.211 kb on - strand, within HP15_3028 at 3173.211 kb on - strand, within HP15_3028 at 3173.213 kb on + strand, within HP15_3028 at 3173.221 kb on - strand, within HP15_3028 at 3173.221 kb on - strand, within HP15_3028
Per-strain Table
Position Strand Gene LocusTag Fraction Glycerol remove 3,170,708 - HP15_3026 0.44 +0.2 3,170,739 + HP15_3026 0.46 +0.0 3,170,762 + HP15_3026 0.47 -0.9 3,170,839 + HP15_3026 0.53 -0.1 3,170,856 - HP15_3026 0.54 -1.4 3,170,866 - HP15_3026 0.54 -0.2 3,170,899 + HP15_3026 0.57 -0.1 3,171,038 + HP15_3026 0.66 -0.3 3,171,051 + HP15_3026 0.67 +0.3 3,171,063 - HP15_3026 0.67 -0.3 3,171,068 - HP15_3026 0.68 -0.2 3,171,098 + HP15_3026 0.70 +0.1 3,171,106 - HP15_3026 0.70 -1.2 3,171,120 - HP15_3026 0.71 +0.9 3,171,264 + HP15_3026 0.81 +0.5 3,171,299 + HP15_3026 0.83 -0.1 3,171,374 - HP15_3026 0.88 -0.3 3,171,478 + -0.5 3,171,486 - +0.9 3,171,557 + -0.9 3,171,613 - +0.5 3,171,692 + HP15_3027 0.16 -1.2 3,171,692 + HP15_3027 0.16 -0.3 3,171,692 + HP15_3027 0.16 -0.5 3,171,700 - HP15_3027 0.17 -0.1 3,171,700 - HP15_3027 0.17 -0.0 3,171,775 - HP15_3027 0.28 -1.1 3,171,858 - HP15_3027 0.39 -0.7 3,171,908 + HP15_3027 0.47 +0.1 3,172,030 - HP15_3027 0.64 -0.3 3,172,090 + HP15_3027 0.72 -0.1 3,172,236 + +0.2 3,172,244 - -0.1 3,172,320 + -1.1 3,172,321 + -1.5 3,172,391 + +0.4 3,172,579 - HP15_3028 0.16 +0.9 3,172,597 - HP15_3028 0.18 -0.7 3,172,959 + HP15_3028 0.48 -0.0 3,173,021 + HP15_3028 0.53 +0.2 3,173,021 + HP15_3028 0.53 -1.1 3,173,024 - HP15_3028 0.54 -0.0 3,173,029 - HP15_3028 0.54 -0.5 3,173,029 - HP15_3028 0.54 +0.9 3,173,029 - HP15_3028 0.54 -0.3 3,173,117 - HP15_3028 0.62 +1.5 3,173,136 + HP15_3028 0.63 -0.9 3,173,162 + HP15_3028 0.65 +0.5 3,173,162 + HP15_3028 0.65 +0.4 3,173,170 - HP15_3028 0.66 -0.4 3,173,170 - HP15_3028 0.66 -0.4 3,173,172 + HP15_3028 0.66 -0.1 3,173,175 - HP15_3028 0.66 -0.1 3,173,175 - HP15_3028 0.66 +0.2 3,173,181 + HP15_3028 0.67 -0.5 3,173,181 + HP15_3028 0.67 -0.9 3,173,189 - HP15_3028 0.68 -0.3 3,173,211 - HP15_3028 0.69 -0.3 3,173,211 - HP15_3028 0.69 -0.5 3,173,213 + HP15_3028 0.70 -0.4 3,173,221 - HP15_3028 0.70 -1.1 3,173,221 - HP15_3028 0.70 -0.6
Or see this region's nucleotide sequence