Experiment: Glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2960 and HP15_2961 overlap by 14 nucleotides HP15_2961 and HP15_2962 are separated by 96 nucleotides
HP15_2960: HP15_2960 - two-component sensor, at 3,104,467 to 3,105,933
_2960
HP15_2961: HP15_2961 - two component transcriptional regulator, winged helix family, at 3,105,920 to 3,106,660
_2961
HP15_2962: HP15_2962 - conserved hypothetical protein, secreted, at 3,106,757 to 3,108,001
_2962
Position (kb)
3105
3106
3107 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3104.929 kb on - strand, within HP15_2960 at 3105.035 kb on + strand, within HP15_2960 at 3105.118 kb on - strand, within HP15_2960 at 3105.124 kb on + strand, within HP15_2960 at 3105.351 kb on + strand, within HP15_2960 at 3105.371 kb on - strand, within HP15_2960 at 3105.407 kb on - strand, within HP15_2960 at 3105.417 kb on + strand, within HP15_2960 at 3105.429 kb on + strand, within HP15_2960 at 3105.448 kb on - strand, within HP15_2960 at 3105.469 kb on - strand, within HP15_2960 at 3105.542 kb on + strand, within HP15_2960 at 3105.542 kb on + strand, within HP15_2960 at 3105.542 kb on + strand, within HP15_2960 at 3105.863 kb on - strand at 3105.975 kb on + strand at 3105.983 kb on - strand at 3105.999 kb on - strand, within HP15_2961 at 3106.006 kb on - strand, within HP15_2961 at 3106.084 kb on + strand, within HP15_2961 at 3106.097 kb on - strand, within HP15_2961 at 3106.103 kb on + strand, within HP15_2961 at 3106.125 kb on + strand, within HP15_2961 at 3106.155 kb on + strand, within HP15_2961 at 3106.168 kb on - strand, within HP15_2961 at 3106.264 kb on + strand, within HP15_2961 at 3106.272 kb on - strand, within HP15_2961 at 3106.303 kb on - strand, within HP15_2961 at 3106.313 kb on + strand, within HP15_2961 at 3106.344 kb on + strand, within HP15_2961 at 3106.462 kb on + strand, within HP15_2961 at 3106.544 kb on - strand, within HP15_2961 at 3106.567 kb on - strand, within HP15_2961 at 3106.637 kb on + strand at 3106.726 kb on - strand at 3106.834 kb on + strand at 3106.835 kb on + strand at 3106.842 kb on - strand at 3106.973 kb on + strand, within HP15_2962 at 3106.973 kb on + strand, within HP15_2962 at 3107.081 kb on - strand, within HP15_2962 at 3107.191 kb on - strand, within HP15_2962 at 3107.217 kb on + strand, within HP15_2962 at 3107.239 kb on + strand, within HP15_2962 at 3107.239 kb on + strand, within HP15_2962 at 3107.247 kb on - strand, within HP15_2962 at 3107.247 kb on - strand, within HP15_2962 at 3107.254 kb on + strand, within HP15_2962 at 3107.272 kb on - strand, within HP15_2962 at 3107.317 kb on - strand, within HP15_2962 at 3107.321 kb on + strand, within HP15_2962 at 3107.356 kb on + strand, within HP15_2962 at 3107.361 kb on + strand, within HP15_2962 at 3107.361 kb on + strand, within HP15_2962 at 3107.369 kb on - strand, within HP15_2962 at 3107.369 kb on - strand, within HP15_2962 at 3107.369 kb on - strand, within HP15_2962 at 3107.369 kb on - strand, within HP15_2962 at 3107.369 kb on - strand, within HP15_2962 at 3107.411 kb on + strand, within HP15_2962 at 3107.433 kb on + strand, within HP15_2962 at 3107.552 kb on + strand, within HP15_2962 at 3107.584 kb on - strand, within HP15_2962
Per-strain Table
Position Strand Gene LocusTag Fraction Glycerol remove 3,104,929 - HP15_2960 0.31 +0.1 3,105,035 + HP15_2960 0.39 +0.7 3,105,118 - HP15_2960 0.44 +0.5 3,105,124 + HP15_2960 0.45 -0.0 3,105,351 + HP15_2960 0.60 -0.1 3,105,371 - HP15_2960 0.62 +1.9 3,105,407 - HP15_2960 0.64 +1.4 3,105,417 + HP15_2960 0.65 +0.1 3,105,429 + HP15_2960 0.66 -0.2 3,105,448 - HP15_2960 0.67 +0.3 3,105,469 - HP15_2960 0.68 +0.5 3,105,542 + HP15_2960 0.73 -0.4 3,105,542 + HP15_2960 0.73 +0.2 3,105,542 + HP15_2960 0.73 -0.6 3,105,863 - +0.3 3,105,975 + -0.1 3,105,983 - +0.3 3,105,999 - HP15_2961 0.11 -0.1 3,106,006 - HP15_2961 0.12 +0.3 3,106,084 + HP15_2961 0.22 -0.3 3,106,097 - HP15_2961 0.24 -2.1 3,106,103 + HP15_2961 0.25 -0.5 3,106,125 + HP15_2961 0.28 -1.1 3,106,155 + HP15_2961 0.32 +0.6 3,106,168 - HP15_2961 0.33 +2.5 3,106,264 + HP15_2961 0.46 +0.9 3,106,272 - HP15_2961 0.48 +0.3 3,106,303 - HP15_2961 0.52 -0.4 3,106,313 + HP15_2961 0.53 -0.9 3,106,344 + HP15_2961 0.57 +0.9 3,106,462 + HP15_2961 0.73 +0.5 3,106,544 - HP15_2961 0.84 -0.7 3,106,567 - HP15_2961 0.87 +0.0 3,106,637 + -0.6 3,106,726 - +0.5 3,106,834 + +0.1 3,106,835 + -0.2 3,106,842 - -1.0 3,106,973 + HP15_2962 0.17 +0.9 3,106,973 + HP15_2962 0.17 -0.5 3,107,081 - HP15_2962 0.26 +0.4 3,107,191 - HP15_2962 0.35 +0.1 3,107,217 + HP15_2962 0.37 +0.8 3,107,239 + HP15_2962 0.39 +0.1 3,107,239 + HP15_2962 0.39 +0.2 3,107,247 - HP15_2962 0.39 +0.7 3,107,247 - HP15_2962 0.39 -0.7 3,107,254 + HP15_2962 0.40 +0.3 3,107,272 - HP15_2962 0.41 -0.2 3,107,317 - HP15_2962 0.45 +0.0 3,107,321 + HP15_2962 0.45 +0.7 3,107,356 + HP15_2962 0.48 -0.4 3,107,361 + HP15_2962 0.49 -0.1 3,107,361 + HP15_2962 0.49 +0.2 3,107,369 - HP15_2962 0.49 -1.7 3,107,369 - HP15_2962 0.49 +0.0 3,107,369 - HP15_2962 0.49 +2.5 3,107,369 - HP15_2962 0.49 +0.2 3,107,369 - HP15_2962 0.49 +0.0 3,107,411 + HP15_2962 0.53 +0.1 3,107,433 + HP15_2962 0.54 -0.6 3,107,552 + HP15_2962 0.64 +0.9 3,107,584 - HP15_2962 0.66 -0.2
Or see this region's nucleotide sequence