Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c29040

Experiment: m.b. Thallium(I) acetate 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c29030 and PGA1_c29040 are separated by 177 nucleotidesPGA1_c29040 and PGA1_c29050 overlap by 4 nucleotides PGA1_c29020: PGA1_c29020 - hypothetical protein, at 3,043,060 to 3,043,344 _c29020 PGA1_c29030: PGA1_c29030 - HTH-type transcriptional regulator, AraC family, related to methylated-DNA-[protein]-cysteine S-methyltransferase, at 3,043,299 to 3,044,156 _c29030 PGA1_c29040: PGA1_c29040 - endonuclease III, at 3,044,334 to 3,044,978 _c29040 PGA1_c29050: PGA1_c29050 - putative carbohydrate kinase, PfkB family, at 3,044,975 to 3,045,964 _c29050 Position (kb) 3044 3045Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3043.344 kb on + strandat 3043.372 kb on + strandat 3043.372 kb on + strandat 3043.399 kb on + strand, within PGA1_c29030at 3043.449 kb on - strand, within PGA1_c29030at 3043.526 kb on + strand, within PGA1_c29030at 3043.610 kb on + strand, within PGA1_c29030at 3043.643 kb on - strand, within PGA1_c29030at 3043.708 kb on + strand, within PGA1_c29030at 3043.772 kb on + strand, within PGA1_c29030at 3043.772 kb on + strand, within PGA1_c29030at 3043.780 kb on - strand, within PGA1_c29030at 3043.858 kb on + strand, within PGA1_c29030at 3043.858 kb on - strand, within PGA1_c29030at 3043.912 kb on + strand, within PGA1_c29030at 3044.001 kb on - strand, within PGA1_c29030at 3044.067 kb on + strand, within PGA1_c29030at 3044.067 kb on + strand, within PGA1_c29030at 3044.067 kb on + strand, within PGA1_c29030at 3044.104 kb on - strandat 3044.151 kb on - strandat 3044.152 kb on + strandat 3044.164 kb on - strandat 3044.165 kb on + strandat 3044.173 kb on - strandat 3044.173 kb on - strandat 3044.173 kb on - strandat 3044.173 kb on - strandat 3044.173 kb on - strandat 3044.198 kb on + strandat 3044.198 kb on + strandat 3044.202 kb on + strandat 3044.202 kb on + strandat 3044.202 kb on + strandat 3044.210 kb on - strandat 3044.210 kb on - strandat 3044.210 kb on - strandat 3044.235 kb on - strandat 3044.261 kb on + strandat 3044.264 kb on - strandat 3044.269 kb on - strandat 3044.269 kb on - strandat 3044.304 kb on + strandat 3044.312 kb on - strandat 3044.319 kb on + strandat 3044.319 kb on + strandat 3044.319 kb on + strandat 3044.319 kb on + strandat 3044.319 kb on + strandat 3044.319 kb on + strandat 3044.327 kb on - strandat 3044.327 kb on - strandat 3044.327 kb on - strandat 3044.327 kb on - strandat 3044.327 kb on - strandat 3044.327 kb on - strandat 3044.334 kb on - strandat 3044.361 kb on - strandat 3044.381 kb on + strandat 3044.381 kb on + strandat 3044.381 kb on + strandat 3044.389 kb on - strandat 3044.389 kb on - strandat 3044.410 kb on - strand, within PGA1_c29040at 3044.410 kb on - strand, within PGA1_c29040at 3044.431 kb on + strand, within PGA1_c29040at 3044.431 kb on - strand, within PGA1_c29040at 3044.437 kb on + strand, within PGA1_c29040at 3044.497 kb on + strand, within PGA1_c29040at 3044.526 kb on + strand, within PGA1_c29040at 3044.546 kb on + strand, within PGA1_c29040at 3044.570 kb on + strand, within PGA1_c29040at 3044.570 kb on + strand, within PGA1_c29040at 3044.578 kb on + strand, within PGA1_c29040at 3044.583 kb on + strand, within PGA1_c29040at 3044.583 kb on + strand, within PGA1_c29040at 3044.583 kb on + strand, within PGA1_c29040at 3044.586 kb on - strand, within PGA1_c29040at 3044.591 kb on - strand, within PGA1_c29040at 3044.761 kb on + strand, within PGA1_c29040at 3044.761 kb on + strand, within PGA1_c29040at 3044.769 kb on - strand, within PGA1_c29040at 3044.854 kb on + strand, within PGA1_c29040at 3044.893 kb on + strand, within PGA1_c29040at 3044.901 kb on - strand, within PGA1_c29040at 3045.042 kb on + strandat 3045.042 kb on + strandat 3045.042 kb on + strandat 3045.050 kb on - strandat 3045.246 kb on - strand, within PGA1_c29050at 3045.246 kb on - strand, within PGA1_c29050at 3045.250 kb on + strand, within PGA1_c29050at 3045.258 kb on - strand, within PGA1_c29050at 3045.378 kb on + strand, within PGA1_c29050at 3045.554 kb on + strand, within PGA1_c29050at 3045.636 kb on - strand, within PGA1_c29050at 3045.648 kb on - strand, within PGA1_c29050at 3045.665 kb on + strand, within PGA1_c29050at 3045.670 kb on + strand, within PGA1_c29050at 3045.670 kb on + strand, within PGA1_c29050at 3045.678 kb on - strand, within PGA1_c29050at 3045.680 kb on + strand, within PGA1_c29050at 3045.688 kb on - strand, within PGA1_c29050at 3045.729 kb on + strand, within PGA1_c29050at 3045.733 kb on + strand, within PGA1_c29050at 3045.733 kb on + strand, within PGA1_c29050at 3045.742 kb on - strand, within PGA1_c29050at 3045.787 kb on + strand, within PGA1_c29050at 3045.835 kb on + strand, within PGA1_c29050at 3045.842 kb on + strand, within PGA1_c29050at 3045.843 kb on - strand, within PGA1_c29050at 3045.938 kb on + strandat 3045.941 kb on - strandat 3045.958 kb on + strandat 3045.961 kb on - strandat 3045.967 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.002 mg/ml
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3,043,344 + +0.2
3,043,372 + +0.2
3,043,372 + +0.3
3,043,399 + PGA1_c29030 0.12 -0.5
3,043,449 - PGA1_c29030 0.17 -1.5
3,043,526 + PGA1_c29030 0.26 -0.2
3,043,610 + PGA1_c29030 0.36 -0.1
3,043,643 - PGA1_c29030 0.40 +0.5
3,043,708 + PGA1_c29030 0.48 -0.3
3,043,772 + PGA1_c29030 0.55 -0.5
3,043,772 + PGA1_c29030 0.55 -1.7
3,043,780 - PGA1_c29030 0.56 -1.7
3,043,858 + PGA1_c29030 0.65 -1.0
3,043,858 - PGA1_c29030 0.65 -0.1
3,043,912 + PGA1_c29030 0.71 -0.9
3,044,001 - PGA1_c29030 0.82 -0.1
3,044,067 + PGA1_c29030 0.90 -0.9
3,044,067 + PGA1_c29030 0.90 +0.8
3,044,067 + PGA1_c29030 0.90 +0.4
3,044,104 - -0.3
3,044,151 - +1.1
3,044,152 + +0.8
3,044,164 - +0.3
3,044,165 + -0.5
3,044,173 - -0.8
3,044,173 - -0.9
3,044,173 - +0.2
3,044,173 - +1.0
3,044,173 - +0.5
3,044,198 + -0.9
3,044,198 + +1.0
3,044,202 + +0.3
3,044,202 + -0.8
3,044,202 + +1.3
3,044,210 - +1.7
3,044,210 - +0.5
3,044,210 - +0.7
3,044,235 - -0.2
3,044,261 + -1.0
3,044,264 - +0.3
3,044,269 - -2.3
3,044,269 - -0.3
3,044,304 + -0.9
3,044,312 - +0.6
3,044,319 + +0.8
3,044,319 + -0.0
3,044,319 + -0.2
3,044,319 + +0.2
3,044,319 + -1.0
3,044,319 + -0.3
3,044,327 - -0.3
3,044,327 - -1.7
3,044,327 - -0.5
3,044,327 - +0.7
3,044,327 - -1.5
3,044,327 - -0.9
3,044,334 - -0.6
3,044,361 - -0.2
3,044,381 + -0.1
3,044,381 + -0.9
3,044,381 + +1.0
3,044,389 - -0.9
3,044,389 - -0.1
3,044,410 - PGA1_c29040 0.12 +1.4
3,044,410 - PGA1_c29040 0.12 -1.3
3,044,431 + PGA1_c29040 0.15 +0.3
3,044,431 - PGA1_c29040 0.15 +3.0
3,044,437 + PGA1_c29040 0.16 +0.2
3,044,497 + PGA1_c29040 0.25 -1.8
3,044,526 + PGA1_c29040 0.30 +0.1
3,044,546 + PGA1_c29040 0.33 -1.2
3,044,570 + PGA1_c29040 0.37 -0.3
3,044,570 + PGA1_c29040 0.37 +1.1
3,044,578 + PGA1_c29040 0.38 -0.2
3,044,583 + PGA1_c29040 0.39 +0.6
3,044,583 + PGA1_c29040 0.39 +1.6
3,044,583 + PGA1_c29040 0.39 +0.7
3,044,586 - PGA1_c29040 0.39 +0.1
3,044,591 - PGA1_c29040 0.40 -0.6
3,044,761 + PGA1_c29040 0.66 +0.1
3,044,761 + PGA1_c29040 0.66 -0.5
3,044,769 - PGA1_c29040 0.67 +1.1
3,044,854 + PGA1_c29040 0.81 +1.2
3,044,893 + PGA1_c29040 0.87 +0.8
3,044,901 - PGA1_c29040 0.88 +1.2
3,045,042 + -1.1
3,045,042 + +0.3
3,045,042 + -0.9
3,045,050 - -1.5
3,045,246 - PGA1_c29050 0.27 -0.6
3,045,246 - PGA1_c29050 0.27 +1.8
3,045,250 + PGA1_c29050 0.28 -2.3
3,045,258 - PGA1_c29050 0.29 -0.5
3,045,378 + PGA1_c29050 0.41 -1.7
3,045,554 + PGA1_c29050 0.58 +2.0
3,045,636 - PGA1_c29050 0.67 +0.5
3,045,648 - PGA1_c29050 0.68 -1.2
3,045,665 + PGA1_c29050 0.70 +0.8
3,045,670 + PGA1_c29050 0.70 +1.2
3,045,670 + PGA1_c29050 0.70 -2.0
3,045,678 - PGA1_c29050 0.71 +0.3
3,045,680 + PGA1_c29050 0.71 +0.4
3,045,688 - PGA1_c29050 0.72 -0.3
3,045,729 + PGA1_c29050 0.76 +0.5
3,045,733 + PGA1_c29050 0.77 -0.8
3,045,733 + PGA1_c29050 0.77 -0.7
3,045,742 - PGA1_c29050 0.77 +1.1
3,045,787 + PGA1_c29050 0.82 -0.3
3,045,835 + PGA1_c29050 0.87 +1.1
3,045,842 + PGA1_c29050 0.88 -0.9
3,045,843 - PGA1_c29050 0.88 -1.9
3,045,938 + -0.2
3,045,941 - -1.1
3,045,958 + -0.2
3,045,961 - -0.5
3,045,967 - +1.0

Or see this region's nucleotide sequence