Experiment: Glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2662 and HP15_2663 overlap by 4 nucleotides HP15_2663 and HP15_2664 are separated by 18 nucleotides HP15_2664 and HP15_2665 are separated by 69 nucleotides HP15_2665 and HP15_2666 are separated by 10 nucleotides HP15_2666 and HP15_2667 are separated by 97 nucleotides
HP15_2662: HP15_2662 - two-component sensor histidine kinase, at 2,811,938 to 2,813,557
_2662
HP15_2663: HP15_2663 - response regulator receiver and unknown domain protein, at 2,813,554 to 2,814,249
_2663
HP15_2664: HP15_2664 - peptidase M48, Ste24p, at 2,814,268 to 2,815,059
_2664
HP15_2665: HP15_2665 - conserved hypothetical protein, membrane, at 2,815,129 to 2,815,641
_2665
HP15_2666: HP15_2666 - membrane protein, at 2,815,652 to 2,815,930
_2666
HP15_2667: HP15_2667 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain protein, at 2,816,028 to 2,816,810
_2667
Position (kb)
2814
2815
2816 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2813.294 kb on - strand, within HP15_2662 at 2813.400 kb on + strand at 2813.401 kb on - strand at 2813.424 kb on + strand at 2813.432 kb on - strand at 2813.458 kb on + strand at 2813.458 kb on + strand at 2813.458 kb on + strand at 2813.466 kb on - strand at 2813.480 kb on + strand at 2813.521 kb on - strand at 2813.521 kb on - strand at 2813.521 kb on - strand at 2813.521 kb on - strand at 2813.521 kb on - strand at 2813.521 kb on - strand at 2813.772 kb on - strand, within HP15_2663 at 2813.818 kb on + strand, within HP15_2663 at 2813.818 kb on + strand, within HP15_2663 at 2813.832 kb on - strand, within HP15_2663 at 2813.912 kb on + strand, within HP15_2663 at 2813.912 kb on + strand, within HP15_2663 at 2813.920 kb on - strand, within HP15_2663 at 2813.979 kb on + strand, within HP15_2663 at 2814.264 kb on - strand at 2814.367 kb on + strand, within HP15_2664 at 2814.382 kb on + strand, within HP15_2664 at 2814.392 kb on + strand, within HP15_2664 at 2814.446 kb on + strand, within HP15_2664 at 2814.446 kb on + strand, within HP15_2664 at 2814.446 kb on + strand, within HP15_2664 at 2814.446 kb on + strand, within HP15_2664 at 2814.454 kb on - strand, within HP15_2664 at 2814.456 kb on + strand, within HP15_2664 at 2814.464 kb on - strand, within HP15_2664 at 2814.468 kb on + strand, within HP15_2664 at 2814.469 kb on + strand, within HP15_2664 at 2814.477 kb on - strand, within HP15_2664 at 2814.484 kb on + strand, within HP15_2664 at 2814.553 kb on + strand, within HP15_2664 at 2814.568 kb on - strand, within HP15_2664 at 2814.703 kb on - strand, within HP15_2664 at 2814.770 kb on - strand, within HP15_2664 at 2814.777 kb on + strand, within HP15_2664 at 2814.878 kb on + strand, within HP15_2664 at 2814.896 kb on + strand, within HP15_2664 at 2814.904 kb on - strand, within HP15_2664 at 2815.056 kb on - strand at 2815.082 kb on - strand at 2815.165 kb on - strand at 2815.165 kb on - strand at 2815.212 kb on + strand, within HP15_2665 at 2815.264 kb on - strand, within HP15_2665 at 2815.418 kb on + strand, within HP15_2665 at 2815.452 kb on + strand, within HP15_2665 at 2815.452 kb on + strand, within HP15_2665 at 2815.452 kb on + strand, within HP15_2665 at 2815.460 kb on - strand, within HP15_2665 at 2815.460 kb on - strand, within HP15_2665 at 2815.460 kb on - strand, within HP15_2665 at 2815.460 kb on - strand, within HP15_2665 at 2815.486 kb on - strand, within HP15_2665 at 2815.588 kb on + strand, within HP15_2665 at 2815.745 kb on + strand, within HP15_2666 at 2815.943 kb on + strand at 2816.024 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycerol remove 2,813,294 - HP15_2662 0.84 +1.3 2,813,400 + +1.4 2,813,401 - +0.8 2,813,424 + +0.8 2,813,432 - +0.8 2,813,458 + +1.6 2,813,458 + +0.8 2,813,458 + +0.8 2,813,466 - +0.8 2,813,480 + +1.4 2,813,521 - -0.2 2,813,521 - +1.4 2,813,521 - +0.6 2,813,521 - +1.8 2,813,521 - -0.4 2,813,521 - +0.8 2,813,772 - HP15_2663 0.31 +1.4 2,813,818 + HP15_2663 0.38 +1.6 2,813,818 + HP15_2663 0.38 +1.8 2,813,832 - HP15_2663 0.40 +0.8 2,813,912 + HP15_2663 0.51 +0.9 2,813,912 + HP15_2663 0.51 +1.7 2,813,920 - HP15_2663 0.53 +1.5 2,813,979 + HP15_2663 0.61 +2.1 2,814,264 - +0.8 2,814,367 + HP15_2664 0.12 -0.2 2,814,382 + HP15_2664 0.14 -1.0 2,814,392 + HP15_2664 0.16 -0.3 2,814,446 + HP15_2664 0.22 -0.3 2,814,446 + HP15_2664 0.22 +0.0 2,814,446 + HP15_2664 0.22 -0.6 2,814,446 + HP15_2664 0.22 -0.2 2,814,454 - HP15_2664 0.23 -0.2 2,814,456 + HP15_2664 0.24 -1.2 2,814,464 - HP15_2664 0.25 +0.6 2,814,468 + HP15_2664 0.25 +0.9 2,814,469 + HP15_2664 0.25 +0.3 2,814,477 - HP15_2664 0.26 +0.3 2,814,484 + HP15_2664 0.27 -0.2 2,814,553 + HP15_2664 0.36 -0.8 2,814,568 - HP15_2664 0.38 +0.5 2,814,703 - HP15_2664 0.55 +0.8 2,814,770 - HP15_2664 0.63 -1.0 2,814,777 + HP15_2664 0.64 -1.2 2,814,878 + HP15_2664 0.77 +0.1 2,814,896 + HP15_2664 0.79 -0.6 2,814,904 - HP15_2664 0.80 -0.7 2,815,056 - +0.5 2,815,082 - +0.2 2,815,165 - +1.2 2,815,165 - -1.0 2,815,212 + HP15_2665 0.16 -0.5 2,815,264 - HP15_2665 0.26 -0.4 2,815,418 + HP15_2665 0.56 -1.2 2,815,452 + HP15_2665 0.63 -0.5 2,815,452 + HP15_2665 0.63 +0.5 2,815,452 + HP15_2665 0.63 -0.3 2,815,460 - HP15_2665 0.65 -0.9 2,815,460 - HP15_2665 0.65 -0.4 2,815,460 - HP15_2665 0.65 +1.8 2,815,460 - HP15_2665 0.65 +0.2 2,815,486 - HP15_2665 0.70 +3.1 2,815,588 + HP15_2665 0.89 -0.7 2,815,745 + HP15_2666 0.33 +0.3 2,815,943 + +0.8 2,816,024 + -0.3
Or see this region's nucleotide sequence