Experiment: m.b. Thallium(I) acetate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c26770 and PGA1_c26780 are separated by 54 nucleotides PGA1_c26780 and PGA1_c26790 are separated by 172 nucleotides PGA1_c26790 and PGA1_c26800 are separated by 6 nucleotides
PGA1_c26770: PGA1_c26770 - tryptophanyl-tRNA synthetase TrpS, at 2,794,698 to 2,795,726
_c26770
PGA1_c26780: PGA1_c26780 - cold shock protein CspA, at 2,795,781 to 2,795,987
_c26780
PGA1_c26790: PGA1_c26790 - transcriptional regulator, TetR family, at 2,796,160 to 2,796,756
_c26790
PGA1_c26800: PGA1_c26800 - phenylacetate-CoA ligase PaaK, at 2,796,763 to 2,798,073
_c26800
Position (kb)
2795
2796 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2795.704 kb on + strand at 2795.749 kb on - strand at 2795.768 kb on - strand at 2795.794 kb on + strand at 2795.822 kb on - strand, within PGA1_c26780 at 2795.827 kb on + strand, within PGA1_c26780 at 2795.827 kb on + strand, within PGA1_c26780 at 2795.828 kb on - strand, within PGA1_c26780 at 2795.835 kb on - strand, within PGA1_c26780 at 2795.870 kb on + strand, within PGA1_c26780 at 2795.878 kb on - strand, within PGA1_c26780 at 2795.989 kb on - strand at 2796.061 kb on + strand at 2796.069 kb on - strand at 2796.069 kb on - strand at 2796.130 kb on - strand at 2796.145 kb on + strand at 2796.194 kb on + strand at 2796.202 kb on - strand at 2796.219 kb on - strand at 2796.228 kb on - strand, within PGA1_c26790 at 2796.230 kb on - strand, within PGA1_c26790 at 2796.230 kb on - strand, within PGA1_c26790 at 2796.230 kb on - strand, within PGA1_c26790 at 2796.267 kb on - strand, within PGA1_c26790 at 2796.309 kb on - strand, within PGA1_c26790 at 2796.355 kb on - strand, within PGA1_c26790 at 2796.430 kb on - strand, within PGA1_c26790 at 2796.450 kb on - strand, within PGA1_c26790 at 2796.485 kb on + strand, within PGA1_c26790 at 2796.509 kb on - strand, within PGA1_c26790 at 2796.522 kb on + strand, within PGA1_c26790 at 2796.522 kb on + strand, within PGA1_c26790 at 2796.530 kb on + strand, within PGA1_c26790 at 2796.538 kb on - strand, within PGA1_c26790 at 2796.538 kb on - strand, within PGA1_c26790 at 2796.552 kb on + strand, within PGA1_c26790 at 2796.560 kb on - strand, within PGA1_c26790 at 2796.571 kb on - strand, within PGA1_c26790 at 2796.622 kb on - strand, within PGA1_c26790 at 2796.675 kb on - strand, within PGA1_c26790 at 2796.688 kb on + strand, within PGA1_c26790 at 2796.696 kb on - strand, within PGA1_c26790 at 2796.745 kb on + strand at 2796.791 kb on + strand at 2796.801 kb on + strand at 2796.869 kb on - strand at 2796.874 kb on - strand at 2796.889 kb on - strand at 2796.894 kb on - strand, within PGA1_c26800 at 2796.932 kb on - strand, within PGA1_c26800 at 2796.956 kb on + strand, within PGA1_c26800 at 2796.971 kb on + strand, within PGA1_c26800 at 2796.971 kb on + strand, within PGA1_c26800 at 2796.971 kb on + strand, within PGA1_c26800 at 2796.971 kb on + strand, within PGA1_c26800 at 2796.971 kb on + strand, within PGA1_c26800 at 2796.971 kb on + strand, within PGA1_c26800 at 2796.979 kb on - strand, within PGA1_c26800 at 2796.979 kb on - strand, within PGA1_c26800
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.002 mg/ml remove 2,795,704 + -0.4 2,795,749 - +0.0 2,795,768 - -0.7 2,795,794 + +2.7 2,795,822 - PGA1_c26780 0.20 -0.4 2,795,827 + PGA1_c26780 0.22 +0.8 2,795,827 + PGA1_c26780 0.22 -0.7 2,795,828 - PGA1_c26780 0.23 +1.8 2,795,835 - PGA1_c26780 0.26 +1.9 2,795,870 + PGA1_c26780 0.43 +1.6 2,795,878 - PGA1_c26780 0.47 +0.3 2,795,989 - +0.4 2,796,061 + -0.3 2,796,069 - +0.0 2,796,069 - +1.1 2,796,130 - +0.8 2,796,145 + -0.4 2,796,194 + +0.2 2,796,202 - -0.4 2,796,219 - +0.5 2,796,228 - PGA1_c26790 0.11 +0.8 2,796,230 - PGA1_c26790 0.12 -0.5 2,796,230 - PGA1_c26790 0.12 -0.8 2,796,230 - PGA1_c26790 0.12 +1.6 2,796,267 - PGA1_c26790 0.18 -1.3 2,796,309 - PGA1_c26790 0.25 -0.2 2,796,355 - PGA1_c26790 0.33 +1.0 2,796,430 - PGA1_c26790 0.45 +0.1 2,796,450 - PGA1_c26790 0.49 +0.1 2,796,485 + PGA1_c26790 0.54 -0.5 2,796,509 - PGA1_c26790 0.58 -0.3 2,796,522 + PGA1_c26790 0.61 -0.0 2,796,522 + PGA1_c26790 0.61 -0.6 2,796,530 + PGA1_c26790 0.62 -0.6 2,796,538 - PGA1_c26790 0.63 -2.2 2,796,538 - PGA1_c26790 0.63 -0.4 2,796,552 + PGA1_c26790 0.66 +0.2 2,796,560 - PGA1_c26790 0.67 +0.2 2,796,571 - PGA1_c26790 0.69 +0.6 2,796,622 - PGA1_c26790 0.77 -0.7 2,796,675 - PGA1_c26790 0.86 +0.0 2,796,688 + PGA1_c26790 0.88 +0.4 2,796,696 - PGA1_c26790 0.90 +0.9 2,796,745 + -1.2 2,796,791 + +0.3 2,796,801 + -3.1 2,796,869 - -1.2 2,796,874 - -0.6 2,796,889 - +0.6 2,796,894 - PGA1_c26800 0.10 +1.2 2,796,932 - PGA1_c26800 0.13 -0.6 2,796,956 + PGA1_c26800 0.15 -0.2 2,796,971 + PGA1_c26800 0.16 -1.0 2,796,971 + PGA1_c26800 0.16 -2.2 2,796,971 + PGA1_c26800 0.16 -0.8 2,796,971 + PGA1_c26800 0.16 -0.7 2,796,971 + PGA1_c26800 0.16 +1.1 2,796,971 + PGA1_c26800 0.16 -0.4 2,796,979 - PGA1_c26800 0.16 -0.8 2,796,979 - PGA1_c26800 0.16 -0.7
Or see this region's nucleotide sequence