Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c26560

Experiment: m.b. Thallium(I) acetate 0.002 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c26540 and PGA1_c26550 overlap by 4 nucleotidesPGA1_c26550 and PGA1_c26560 are separated by 91 nucleotidesPGA1_c26560 and PGA1_c26570 overlap by 4 nucleotides PGA1_c26540: PGA1_c26540 - rod shape-determining protein rodA, at 2,767,712 to 2,768,851 _c26540 PGA1_c26550: PGA1_c26550 - transcriptional regulator, LysR family, at 2,768,848 to 2,769,705 _c26550 PGA1_c26560: PGA1_c26560 - Predicted dioxygenase of extradiol dioxygenase family, at 2,769,797 to 2,770,207 _c26560 PGA1_c26570: PGA1_c26570 - putative glyoxylate/hydroxypyruvate reductase A, at 2,770,204 to 2,771,130 _c26570 Position (kb) 2769 2770 2771Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2768.866 kb on + strandat 2768.987 kb on - strand, within PGA1_c26550at 2769.020 kb on + strand, within PGA1_c26550at 2769.028 kb on - strand, within PGA1_c26550at 2769.028 kb on - strand, within PGA1_c26550at 2769.039 kb on + strand, within PGA1_c26550at 2769.039 kb on + strand, within PGA1_c26550at 2769.039 kb on + strand, within PGA1_c26550at 2769.047 kb on - strand, within PGA1_c26550at 2769.047 kb on - strand, within PGA1_c26550at 2769.047 kb on - strand, within PGA1_c26550at 2769.096 kb on + strand, within PGA1_c26550at 2769.096 kb on - strand, within PGA1_c26550at 2769.159 kb on - strand, within PGA1_c26550at 2769.165 kb on + strand, within PGA1_c26550at 2769.185 kb on - strand, within PGA1_c26550at 2769.245 kb on + strand, within PGA1_c26550at 2769.245 kb on + strand, within PGA1_c26550at 2769.245 kb on + strand, within PGA1_c26550at 2769.245 kb on + strand, within PGA1_c26550at 2769.253 kb on - strand, within PGA1_c26550at 2769.253 kb on - strand, within PGA1_c26550at 2769.255 kb on + strand, within PGA1_c26550at 2769.289 kb on + strand, within PGA1_c26550at 2769.293 kb on + strand, within PGA1_c26550at 2769.355 kb on + strand, within PGA1_c26550at 2769.410 kb on + strand, within PGA1_c26550at 2769.418 kb on - strand, within PGA1_c26550at 2769.583 kb on + strand, within PGA1_c26550at 2769.592 kb on - strand, within PGA1_c26550at 2769.663 kb on + strandat 2769.671 kb on - strandat 2769.759 kb on + strandat 2769.767 kb on - strandat 2769.767 kb on - strandat 2769.767 kb on - strandat 2769.767 kb on - strandat 2769.795 kb on - strandat 2769.812 kb on - strandat 2769.838 kb on - strand, within PGA1_c26560at 2769.863 kb on + strand, within PGA1_c26560at 2769.868 kb on + strand, within PGA1_c26560at 2769.878 kb on - strand, within PGA1_c26560at 2769.881 kb on + strand, within PGA1_c26560at 2769.881 kb on - strand, within PGA1_c26560at 2769.881 kb on - strand, within PGA1_c26560at 2769.883 kb on + strand, within PGA1_c26560at 2769.891 kb on - strand, within PGA1_c26560at 2769.895 kb on + strand, within PGA1_c26560at 2770.067 kb on + strand, within PGA1_c26560at 2770.236 kb on + strandat 2770.239 kb on - strandat 2770.270 kb on + strandat 2770.304 kb on + strand, within PGA1_c26570at 2770.316 kb on + strand, within PGA1_c26570at 2770.375 kb on + strand, within PGA1_c26570at 2770.383 kb on - strand, within PGA1_c26570at 2770.383 kb on - strand, within PGA1_c26570at 2770.383 kb on - strand, within PGA1_c26570at 2770.384 kb on - strand, within PGA1_c26570at 2770.417 kb on - strand, within PGA1_c26570at 2770.516 kb on + strand, within PGA1_c26570at 2770.633 kb on + strand, within PGA1_c26570at 2770.633 kb on + strand, within PGA1_c26570at 2770.638 kb on + strand, within PGA1_c26570at 2770.638 kb on + strand, within PGA1_c26570at 2770.638 kb on + strand, within PGA1_c26570at 2770.639 kb on + strand, within PGA1_c26570at 2770.646 kb on - strand, within PGA1_c26570at 2770.668 kb on - strand, within PGA1_c26570at 2770.758 kb on - strand, within PGA1_c26570at 2770.818 kb on - strand, within PGA1_c26570at 2770.847 kb on - strand, within PGA1_c26570at 2770.847 kb on - strand, within PGA1_c26570at 2770.914 kb on - strand, within PGA1_c26570at 2770.937 kb on + strand, within PGA1_c26570at 2770.991 kb on + strand, within PGA1_c26570at 2770.999 kb on - strand, within PGA1_c26570at 2771.011 kb on - strand, within PGA1_c26570at 2771.117 kb on + strandat 2771.177 kb on - strandat 2771.182 kb on - strandat 2771.193 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.002 mg/ml
remove
2,768,866 + +1.1
2,768,987 - PGA1_c26550 0.16 -0.4
2,769,020 + PGA1_c26550 0.20 +0.2
2,769,028 - PGA1_c26550 0.21 -1.1
2,769,028 - PGA1_c26550 0.21 -1.2
2,769,039 + PGA1_c26550 0.22 +1.0
2,769,039 + PGA1_c26550 0.22 +0.6
2,769,039 + PGA1_c26550 0.22 -2.0
2,769,047 - PGA1_c26550 0.23 -0.1
2,769,047 - PGA1_c26550 0.23 +0.0
2,769,047 - PGA1_c26550 0.23 +0.4
2,769,096 + PGA1_c26550 0.29 -0.1
2,769,096 - PGA1_c26550 0.29 +0.2
2,769,159 - PGA1_c26550 0.36 -0.5
2,769,165 + PGA1_c26550 0.37 -0.8
2,769,185 - PGA1_c26550 0.39 +0.8
2,769,245 + PGA1_c26550 0.46 +0.4
2,769,245 + PGA1_c26550 0.46 -0.4
2,769,245 + PGA1_c26550 0.46 +1.9
2,769,245 + PGA1_c26550 0.46 +0.9
2,769,253 - PGA1_c26550 0.47 -1.6
2,769,253 - PGA1_c26550 0.47 +1.3
2,769,255 + PGA1_c26550 0.47 +1.6
2,769,289 + PGA1_c26550 0.51 +0.2
2,769,293 + PGA1_c26550 0.52 +0.4
2,769,355 + PGA1_c26550 0.59 -0.1
2,769,410 + PGA1_c26550 0.66 -0.1
2,769,418 - PGA1_c26550 0.66 +0.2
2,769,583 + PGA1_c26550 0.86 +0.6
2,769,592 - PGA1_c26550 0.87 +0.9
2,769,663 + -0.9
2,769,671 - +1.0
2,769,759 + +1.3
2,769,767 - +0.3
2,769,767 - +0.3
2,769,767 - +0.4
2,769,767 - +0.0
2,769,795 - +1.2
2,769,812 - +0.1
2,769,838 - PGA1_c26560 0.10 +1.2
2,769,863 + PGA1_c26560 0.16 +1.0
2,769,868 + PGA1_c26560 0.17 +1.3
2,769,878 - PGA1_c26560 0.20 -1.0
2,769,881 + PGA1_c26560 0.20 +1.7
2,769,881 - PGA1_c26560 0.20 -0.2
2,769,881 - PGA1_c26560 0.20 +1.3
2,769,883 + PGA1_c26560 0.21 -1.7
2,769,891 - PGA1_c26560 0.23 +0.3
2,769,895 + PGA1_c26560 0.24 +0.1
2,770,067 + PGA1_c26560 0.66 +1.1
2,770,236 + +0.1
2,770,239 - +1.1
2,770,270 + -3.0
2,770,304 + PGA1_c26570 0.11 -0.1
2,770,316 + PGA1_c26570 0.12 +1.9
2,770,375 + PGA1_c26570 0.18 +0.2
2,770,383 - PGA1_c26570 0.19 +0.3
2,770,383 - PGA1_c26570 0.19 -0.5
2,770,383 - PGA1_c26570 0.19 -0.7
2,770,384 - PGA1_c26570 0.19 +0.6
2,770,417 - PGA1_c26570 0.23 -0.7
2,770,516 + PGA1_c26570 0.34 +1.0
2,770,633 + PGA1_c26570 0.46 +1.6
2,770,633 + PGA1_c26570 0.46 -1.0
2,770,638 + PGA1_c26570 0.47 +0.3
2,770,638 + PGA1_c26570 0.47 +0.7
2,770,638 + PGA1_c26570 0.47 -2.3
2,770,639 + PGA1_c26570 0.47 -0.3
2,770,646 - PGA1_c26570 0.48 -0.2
2,770,668 - PGA1_c26570 0.50 -0.3
2,770,758 - PGA1_c26570 0.60 +2.2
2,770,818 - PGA1_c26570 0.66 +1.1
2,770,847 - PGA1_c26570 0.69 +0.6
2,770,847 - PGA1_c26570 0.69 +0.1
2,770,914 - PGA1_c26570 0.77 +0.3
2,770,937 + PGA1_c26570 0.79 +1.0
2,770,991 + PGA1_c26570 0.85 -0.1
2,770,999 - PGA1_c26570 0.86 -1.0
2,771,011 - PGA1_c26570 0.87 +1.2
2,771,117 + +0.3
2,771,177 - -0.7
2,771,182 - +1.0
2,771,193 - +0.6

Or see this region's nucleotide sequence