Experiment: Glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2169 and HP15_2170 are separated by 337 nucleotides HP15_2170 and HP15_2171 are separated by 51 nucleotides HP15_2171 and HP15_2172 are separated by 251 nucleotides
HP15_2169: HP15_2169 - conserved hypothetical protein, secreted, at 2,278,321 to 2,279,448
_2169
HP15_2170: HP15_2170 - ABC-type sugar transport system, periplasmic component, at 2,279,786 to 2,281,570
_2170
HP15_2171: HP15_2171 - uracil-DNA glycosylase superfamily, at 2,281,622 to 2,282,071
_2171
HP15_2172: HP15_2172 - nitrorecductase, at 2,282,323 to 2,283,063
_2172
Position (kb)
2279
2280
2281
2282 Strain fitness (log2 ratio)
-1
0
1
2 at 2278.853 kb on + strand, within HP15_2169 at 2279.148 kb on + strand, within HP15_2169 at 2279.157 kb on + strand, within HP15_2169 at 2279.157 kb on + strand, within HP15_2169 at 2279.157 kb on + strand, within HP15_2169 at 2279.157 kb on + strand, within HP15_2169 at 2279.158 kb on - strand, within HP15_2169 at 2279.353 kb on + strand at 2279.356 kb on - strand at 2279.477 kb on + strand at 2279.490 kb on + strand at 2279.852 kb on + strand at 2279.997 kb on - strand, within HP15_2170 at 2280.009 kb on + strand, within HP15_2170 at 2280.038 kb on + strand, within HP15_2170 at 2280.129 kb on + strand, within HP15_2170 at 2280.168 kb on - strand, within HP15_2170 at 2280.175 kb on + strand, within HP15_2170 at 2280.175 kb on + strand, within HP15_2170 at 2280.246 kb on - strand, within HP15_2170 at 2280.302 kb on - strand, within HP15_2170 at 2280.434 kb on + strand, within HP15_2170 at 2280.465 kb on - strand, within HP15_2170 at 2280.465 kb on - strand, within HP15_2170 at 2280.661 kb on + strand, within HP15_2170 at 2280.786 kb on + strand, within HP15_2170 at 2280.786 kb on + strand, within HP15_2170 at 2280.843 kb on - strand, within HP15_2170 at 2281.193 kb on - strand, within HP15_2170 at 2281.250 kb on + strand, within HP15_2170 at 2281.366 kb on + strand, within HP15_2170 at 2281.366 kb on + strand, within HP15_2170 at 2281.374 kb on - strand, within HP15_2170 at 2281.374 kb on - strand, within HP15_2170 at 2281.379 kb on - strand, within HP15_2170 at 2281.547 kb on + strand at 2281.738 kb on - strand, within HP15_2171 at 2281.739 kb on - strand, within HP15_2171 at 2281.755 kb on + strand, within HP15_2171 at 2281.758 kb on + strand, within HP15_2171 at 2281.806 kb on + strand, within HP15_2171 at 2282.095 kb on - strand at 2282.226 kb on + strand at 2282.438 kb on - strand, within HP15_2172 at 2282.555 kb on + strand, within HP15_2172
Per-strain Table
Position Strand Gene LocusTag Fraction Glycerol remove 2,278,853 + HP15_2169 0.47 -0.5 2,279,148 + HP15_2169 0.73 -1.3 2,279,157 + HP15_2169 0.74 +0.3 2,279,157 + HP15_2169 0.74 +0.5 2,279,157 + HP15_2169 0.74 -0.1 2,279,157 + HP15_2169 0.74 +0.2 2,279,158 - HP15_2169 0.74 +0.4 2,279,353 + +1.3 2,279,356 - -0.3 2,279,477 + +0.2 2,279,490 + -0.5 2,279,852 + +0.7 2,279,997 - HP15_2170 0.12 +0.2 2,280,009 + HP15_2170 0.12 +0.3 2,280,038 + HP15_2170 0.14 +0.4 2,280,129 + HP15_2170 0.19 -0.3 2,280,168 - HP15_2170 0.21 +0.7 2,280,175 + HP15_2170 0.22 +0.2 2,280,175 + HP15_2170 0.22 +1.2 2,280,246 - HP15_2170 0.26 -0.1 2,280,302 - HP15_2170 0.29 -0.6 2,280,434 + HP15_2170 0.36 -0.1 2,280,465 - HP15_2170 0.38 -0.9 2,280,465 - HP15_2170 0.38 -1.3 2,280,661 + HP15_2170 0.49 +0.1 2,280,786 + HP15_2170 0.56 -0.3 2,280,786 + HP15_2170 0.56 +2.0 2,280,843 - HP15_2170 0.59 +0.1 2,281,193 - HP15_2170 0.79 +1.1 2,281,250 + HP15_2170 0.82 +0.4 2,281,366 + HP15_2170 0.89 +0.2 2,281,366 + HP15_2170 0.89 -0.2 2,281,374 - HP15_2170 0.89 +1.7 2,281,374 - HP15_2170 0.89 +0.1 2,281,379 - HP15_2170 0.89 -0.9 2,281,547 + -0.3 2,281,738 - HP15_2171 0.26 -0.2 2,281,739 - HP15_2171 0.26 +2.0 2,281,755 + HP15_2171 0.30 -0.0 2,281,758 + HP15_2171 0.30 +0.5 2,281,806 + HP15_2171 0.41 +0.0 2,282,095 - -0.0 2,282,226 + -0.6 2,282,438 - HP15_2172 0.16 +0.2 2,282,555 + HP15_2172 0.31 -0.3
Or see this region's nucleotide sequence