Experiment: Glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2164 and HP15_2165 are separated by 334 nucleotides HP15_2165 and HP15_2166 are separated by 28 nucleotides
HP15_2164: HP15_2164 - ATP-binding protein of sugar ABC transporter, at 2,270,538 to 2,271,632
_2164
HP15_2165: HP15_2165 - sigma-54 dependent transcriptional regulator, at 2,271,967 to 2,273,847
_2165
HP15_2166: HP15_2166 - glycerol kinase, at 2,273,876 to 2,275,348
_2166
Position (kb)
2271
2272
2273
2274 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2271.072 kb on + strand, within HP15_2164 at 2271.074 kb on + strand, within HP15_2164 at 2271.082 kb on - strand, within HP15_2164 at 2271.084 kb on - strand, within HP15_2164 at 2271.115 kb on + strand, within HP15_2164 at 2271.201 kb on + strand, within HP15_2164 at 2271.209 kb on - strand, within HP15_2164 at 2271.216 kb on - strand, within HP15_2164 at 2271.218 kb on + strand, within HP15_2164 at 2271.234 kb on - strand, within HP15_2164 at 2271.260 kb on - strand, within HP15_2164 at 2271.362 kb on + strand, within HP15_2164 at 2271.484 kb on - strand, within HP15_2164 at 2271.484 kb on - strand, within HP15_2164 at 2271.521 kb on + strand, within HP15_2164 at 2271.620 kb on + strand at 2271.628 kb on - strand at 2271.674 kb on + strand at 2271.896 kb on + strand at 2272.093 kb on - strand at 2272.127 kb on - strand at 2272.175 kb on + strand, within HP15_2165 at 2272.243 kb on + strand, within HP15_2165 at 2272.251 kb on - strand, within HP15_2165 at 2272.389 kb on + strand, within HP15_2165 at 2272.468 kb on - strand, within HP15_2165 at 2272.506 kb on + strand, within HP15_2165 at 2272.514 kb on - strand, within HP15_2165 at 2272.653 kb on + strand, within HP15_2165 at 2272.668 kb on + strand, within HP15_2165 at 2272.932 kb on - strand, within HP15_2165 at 2272.942 kb on - strand, within HP15_2165 at 2273.024 kb on - strand, within HP15_2165 at 2273.131 kb on + strand, within HP15_2165 at 2273.139 kb on - strand, within HP15_2165 at 2273.181 kb on + strand, within HP15_2165 at 2273.189 kb on - strand, within HP15_2165 at 2273.235 kb on + strand, within HP15_2165 at 2273.375 kb on + strand, within HP15_2165 at 2273.410 kb on + strand, within HP15_2165 at 2273.410 kb on + strand, within HP15_2165 at 2273.419 kb on + strand, within HP15_2165 at 2273.651 kb on - strand, within HP15_2165 at 2273.657 kb on + strand, within HP15_2165 at 2273.657 kb on + strand, within HP15_2165 at 2273.665 kb on - strand at 2273.735 kb on - strand at 2273.814 kb on + strand at 2273.814 kb on + strand at 2273.907 kb on + strand at 2273.983 kb on + strand at 2273.993 kb on + strand at 2274.001 kb on - strand at 2274.121 kb on + strand, within HP15_2166 at 2274.298 kb on + strand, within HP15_2166 at 2274.399 kb on - strand, within HP15_2166 at 2274.583 kb on + strand, within HP15_2166 at 2274.632 kb on + strand, within HP15_2166 at 2274.728 kb on + strand, within HP15_2166 at 2274.784 kb on + strand, within HP15_2166 at 2274.810 kb on + strand, within HP15_2166
Per-strain Table
Position Strand Gene LocusTag Fraction Glycerol remove 2,271,072 + HP15_2164 0.49 -0.6 2,271,074 + HP15_2164 0.49 -0.5 2,271,082 - HP15_2164 0.50 +1.3 2,271,084 - HP15_2164 0.50 +0.3 2,271,115 + HP15_2164 0.53 +0.7 2,271,201 + HP15_2164 0.61 -1.3 2,271,209 - HP15_2164 0.61 -0.3 2,271,216 - HP15_2164 0.62 +0.1 2,271,218 + HP15_2164 0.62 -1.5 2,271,234 - HP15_2164 0.64 +0.0 2,271,260 - HP15_2164 0.66 -0.5 2,271,362 + HP15_2164 0.75 -1.3 2,271,484 - HP15_2164 0.86 +0.7 2,271,484 - HP15_2164 0.86 +0.9 2,271,521 + HP15_2164 0.90 +0.4 2,271,620 + +0.2 2,271,628 - +1.7 2,271,674 + +0.0 2,271,896 + +0.1 2,272,093 - -0.1 2,272,127 - -0.3 2,272,175 + HP15_2165 0.11 +0.3 2,272,243 + HP15_2165 0.15 +1.3 2,272,251 - HP15_2165 0.15 -0.9 2,272,389 + HP15_2165 0.22 -0.9 2,272,468 - HP15_2165 0.27 +0.4 2,272,506 + HP15_2165 0.29 +0.4 2,272,514 - HP15_2165 0.29 +0.3 2,272,653 + HP15_2165 0.36 +0.7 2,272,668 + HP15_2165 0.37 -0.6 2,272,932 - HP15_2165 0.51 +0.1 2,272,942 - HP15_2165 0.52 +0.2 2,273,024 - HP15_2165 0.56 -0.0 2,273,131 + HP15_2165 0.62 -0.6 2,273,139 - HP15_2165 0.62 -0.6 2,273,181 + HP15_2165 0.65 +1.0 2,273,189 - HP15_2165 0.65 +0.3 2,273,235 + HP15_2165 0.67 -0.0 2,273,375 + HP15_2165 0.75 -0.5 2,273,410 + HP15_2165 0.77 +1.3 2,273,410 + HP15_2165 0.77 +0.5 2,273,419 + HP15_2165 0.77 -0.6 2,273,651 - HP15_2165 0.90 -2.9 2,273,657 + HP15_2165 0.90 +0.7 2,273,657 + HP15_2165 0.90 -2.6 2,273,665 - -1.1 2,273,735 - +0.2 2,273,814 + -1.4 2,273,814 + -1.9 2,273,907 + -1.5 2,273,983 + +0.7 2,273,993 + -3.1 2,274,001 - -1.3 2,274,121 + HP15_2166 0.17 -1.3 2,274,298 + HP15_2166 0.29 -1.6 2,274,399 - HP15_2166 0.36 -2.6 2,274,583 + HP15_2166 0.48 -2.2 2,274,632 + HP15_2166 0.51 +0.1 2,274,728 + HP15_2166 0.58 -1.3 2,274,784 + HP15_2166 0.62 -3.4 2,274,810 + HP15_2166 0.63 -2.1
Or see this region's nucleotide sequence