Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c19180

Experiment: m.b. Thallium(I) acetate 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c19170 and PGA1_c19180 are separated by 233 nucleotidesPGA1_c19180 and PGA1_c19190 overlap by 4 nucleotidesPGA1_c19190 and PGA1_c19200 are separated by 5 nucleotidesPGA1_c19200 and PGA1_c19210 are separated by 162 nucleotides PGA1_c19170: PGA1_c19170 - sarcosine oxidase subunit beta, at 1,990,583 to 1,991,827 _c19170 PGA1_c19180: PGA1_c19180 - cytochrome c-type biogenesis protein CycH, at 1,992,061 to 1,993,317 _c19180 PGA1_c19190: PGA1_c19190 - RNAse H-fold protein YqgF, at 1,993,314 to 1,993,787 _c19190 PGA1_c19200: PGA1_c19200 - Predicted Fe-S protein, at 1,993,793 to 1,994,026 _c19200 PGA1_c19210: PGA1_c19210 - hypothetical protein, at 1,994,189 to 1,994,983 _c19210 Position (kb) 1992 1993 1994Strain fitness (log2 ratio) -2 -1 0 1 2at 1991.216 kb on + strand, within PGA1_c19170at 1991.226 kb on - strand, within PGA1_c19170at 1991.270 kb on - strand, within PGA1_c19170at 1991.431 kb on + strand, within PGA1_c19170at 1991.454 kb on - strand, within PGA1_c19170at 1991.457 kb on + strand, within PGA1_c19170at 1991.546 kb on + strand, within PGA1_c19170at 1991.595 kb on - strand, within PGA1_c19170at 1991.612 kb on - strand, within PGA1_c19170at 1991.778 kb on + strandat 1991.860 kb on - strandat 1991.868 kb on - strandat 1991.876 kb on + strandat 1991.884 kb on - strandat 1991.922 kb on - strandat 1991.978 kb on + strandat 1992.031 kb on + strandat 1993.106 kb on + strand, within PGA1_c19180at 1993.157 kb on + strand, within PGA1_c19180at 1993.245 kb on + strandat 1993.780 kb on - strandat 1993.790 kb on - strandat 1993.870 kb on + strand, within PGA1_c19200at 1993.948 kb on + strand, within PGA1_c19200at 1993.956 kb on - strand, within PGA1_c19200at 1993.956 kb on - strand, within PGA1_c19200at 1993.956 kb on - strand, within PGA1_c19200at 1994.054 kb on + strandat 1994.064 kb on + strandat 1994.186 kb on - strandat 1994.201 kb on + strandat 1994.202 kb on + strandat 1994.258 kb on + strandat 1994.269 kb on - strand, within PGA1_c19210at 1994.301 kb on - strand, within PGA1_c19210at 1994.308 kb on + strand, within PGA1_c19210at 1994.316 kb on - strand, within PGA1_c19210

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.002 mg/ml
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1,991,216 + PGA1_c19170 0.51 +0.2
1,991,226 - PGA1_c19170 0.52 +0.6
1,991,270 - PGA1_c19170 0.55 -1.0
1,991,431 + PGA1_c19170 0.68 -1.5
1,991,454 - PGA1_c19170 0.70 +0.9
1,991,457 + PGA1_c19170 0.70 -1.1
1,991,546 + PGA1_c19170 0.77 -2.6
1,991,595 - PGA1_c19170 0.81 +0.7
1,991,612 - PGA1_c19170 0.83 -0.6
1,991,778 + -1.3
1,991,860 - -0.6
1,991,868 - +0.8
1,991,876 + -1.2
1,991,884 - -0.7
1,991,922 - -0.6
1,991,978 + -0.3
1,992,031 + +0.3
1,993,106 + PGA1_c19180 0.83 +0.2
1,993,157 + PGA1_c19180 0.87 +0.6
1,993,245 + +0.8
1,993,780 - +0.1
1,993,790 - +1.2
1,993,870 + PGA1_c19200 0.33 +2.2
1,993,948 + PGA1_c19200 0.66 +0.9
1,993,956 - PGA1_c19200 0.70 +1.3
1,993,956 - PGA1_c19200 0.70 +0.6
1,993,956 - PGA1_c19200 0.70 +0.7
1,994,054 + +0.6
1,994,064 + -0.2
1,994,186 - +0.8
1,994,201 + -1.5
1,994,202 + +0.2
1,994,258 + -0.2
1,994,269 - PGA1_c19210 0.10 +0.5
1,994,301 - PGA1_c19210 0.14 -2.0
1,994,308 + PGA1_c19210 0.15 +0.8
1,994,316 - PGA1_c19210 0.16 +1.6

Or see this region's nucleotide sequence