Experiment: m.b. Thallium(I) acetate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c19170 and PGA1_c19180 are separated by 233 nucleotides PGA1_c19180 and PGA1_c19190 overlap by 4 nucleotides PGA1_c19190 and PGA1_c19200 are separated by 5 nucleotides PGA1_c19200 and PGA1_c19210 are separated by 162 nucleotides
PGA1_c19170: PGA1_c19170 - sarcosine oxidase subunit beta, at 1,990,583 to 1,991,827
_c19170
PGA1_c19180: PGA1_c19180 - cytochrome c-type biogenesis protein CycH, at 1,992,061 to 1,993,317
_c19180
PGA1_c19190: PGA1_c19190 - RNAse H-fold protein YqgF, at 1,993,314 to 1,993,787
_c19190
PGA1_c19200: PGA1_c19200 - Predicted Fe-S protein, at 1,993,793 to 1,994,026
_c19200
PGA1_c19210: PGA1_c19210 - hypothetical protein, at 1,994,189 to 1,994,983
_c19210
Position (kb)
1992
1993
1994 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1991.216 kb on + strand, within PGA1_c19170 at 1991.226 kb on - strand, within PGA1_c19170 at 1991.270 kb on - strand, within PGA1_c19170 at 1991.431 kb on + strand, within PGA1_c19170 at 1991.454 kb on - strand, within PGA1_c19170 at 1991.457 kb on + strand, within PGA1_c19170 at 1991.546 kb on + strand, within PGA1_c19170 at 1991.595 kb on - strand, within PGA1_c19170 at 1991.612 kb on - strand, within PGA1_c19170 at 1991.778 kb on + strand at 1991.860 kb on - strand at 1991.868 kb on - strand at 1991.876 kb on + strand at 1991.884 kb on - strand at 1991.922 kb on - strand at 1991.978 kb on + strand at 1992.031 kb on + strand at 1993.106 kb on + strand, within PGA1_c19180 at 1993.157 kb on + strand, within PGA1_c19180 at 1993.245 kb on + strand at 1993.780 kb on - strand at 1993.790 kb on - strand at 1993.870 kb on + strand, within PGA1_c19200 at 1993.948 kb on + strand, within PGA1_c19200 at 1993.956 kb on - strand, within PGA1_c19200 at 1993.956 kb on - strand, within PGA1_c19200 at 1993.956 kb on - strand, within PGA1_c19200 at 1994.054 kb on + strand at 1994.064 kb on + strand at 1994.186 kb on - strand at 1994.201 kb on + strand at 1994.202 kb on + strand at 1994.258 kb on + strand at 1994.269 kb on - strand, within PGA1_c19210 at 1994.301 kb on - strand, within PGA1_c19210 at 1994.308 kb on + strand, within PGA1_c19210 at 1994.316 kb on - strand, within PGA1_c19210
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.002 mg/ml remove 1,991,216 + PGA1_c19170 0.51 +0.2 1,991,226 - PGA1_c19170 0.52 +0.6 1,991,270 - PGA1_c19170 0.55 -1.0 1,991,431 + PGA1_c19170 0.68 -1.5 1,991,454 - PGA1_c19170 0.70 +0.9 1,991,457 + PGA1_c19170 0.70 -1.1 1,991,546 + PGA1_c19170 0.77 -2.6 1,991,595 - PGA1_c19170 0.81 +0.7 1,991,612 - PGA1_c19170 0.83 -0.6 1,991,778 + -1.3 1,991,860 - -0.6 1,991,868 - +0.8 1,991,876 + -1.2 1,991,884 - -0.7 1,991,922 - -0.6 1,991,978 + -0.3 1,992,031 + +0.3 1,993,106 + PGA1_c19180 0.83 +0.2 1,993,157 + PGA1_c19180 0.87 +0.6 1,993,245 + +0.8 1,993,780 - +0.1 1,993,790 - +1.2 1,993,870 + PGA1_c19200 0.33 +2.2 1,993,948 + PGA1_c19200 0.66 +0.9 1,993,956 - PGA1_c19200 0.70 +1.3 1,993,956 - PGA1_c19200 0.70 +0.6 1,993,956 - PGA1_c19200 0.70 +0.7 1,994,054 + +0.6 1,994,064 + -0.2 1,994,186 - +0.8 1,994,201 + -1.5 1,994,202 + +0.2 1,994,258 + -0.2 1,994,269 - PGA1_c19210 0.10 +0.5 1,994,301 - PGA1_c19210 0.14 -2.0 1,994,308 + PGA1_c19210 0.15 +0.8 1,994,316 - PGA1_c19210 0.16 +1.6
Or see this region's nucleotide sequence