Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c19030

Experiment: m.b. Thallium(I) acetate 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c19010 and PGA1_c19030 are separated by 297 nucleotidesPGA1_c19030 and PGA1_c19040 overlap by 4 nucleotides PGA1_c19010: PGA1_c19010 - Uncharacterized protein conserved in bacteria, at 1,972,794 to 1,973,465 _c19010 PGA1_c19030: PGA1_c19030 - putative efflux transporter, RND family, MFP subunit, at 1,973,763 to 1,975,055 _c19030 PGA1_c19040: PGA1_c19040 - multidrug resistance protein MdtC, at 1,975,052 to 1,978,858 _c19040 Position (kb) 1973 1974 1975 1976Strain fitness (log2 ratio) -1 0 1 2 3at 1972.876 kb on - strand, within PGA1_c19010at 1972.927 kb on + strand, within PGA1_c19010at 1972.935 kb on - strand, within PGA1_c19010at 1972.935 kb on - strand, within PGA1_c19010at 1972.967 kb on - strand, within PGA1_c19010at 1973.048 kb on + strand, within PGA1_c19010at 1973.211 kb on - strand, within PGA1_c19010at 1973.270 kb on - strand, within PGA1_c19010at 1973.423 kb on + strandat 1973.449 kb on - strandat 1973.564 kb on - strandat 1973.572 kb on + strandat 1973.620 kb on + strandat 1973.716 kb on + strandat 1973.716 kb on + strandat 1973.724 kb on - strandat 1973.725 kb on - strandat 1973.753 kb on - strandat 1973.753 kb on - strandat 1973.755 kb on + strandat 1973.765 kb on - strandat 1973.775 kb on - strandat 1973.793 kb on - strandat 1973.805 kb on + strandat 1973.808 kb on - strandat 1973.810 kb on + strandat 1973.810 kb on + strandat 1973.813 kb on - strandat 1973.818 kb on - strandat 1973.872 kb on - strandat 1973.872 kb on - strandat 1973.884 kb on + strandat 1973.892 kb on - strandat 1973.949 kb on - strand, within PGA1_c19030at 1974.005 kb on + strand, within PGA1_c19030at 1974.005 kb on + strand, within PGA1_c19030at 1974.005 kb on + strand, within PGA1_c19030at 1974.005 kb on + strand, within PGA1_c19030at 1974.008 kb on - strand, within PGA1_c19030at 1974.013 kb on - strand, within PGA1_c19030at 1974.034 kb on + strand, within PGA1_c19030at 1974.044 kb on - strand, within PGA1_c19030at 1974.071 kb on + strand, within PGA1_c19030at 1974.097 kb on + strand, within PGA1_c19030at 1974.102 kb on - strand, within PGA1_c19030at 1974.115 kb on - strand, within PGA1_c19030at 1974.127 kb on - strand, within PGA1_c19030at 1974.134 kb on + strand, within PGA1_c19030at 1974.134 kb on + strand, within PGA1_c19030at 1974.134 kb on + strand, within PGA1_c19030at 1974.134 kb on + strand, within PGA1_c19030at 1974.134 kb on + strand, within PGA1_c19030at 1974.142 kb on - strand, within PGA1_c19030at 1974.142 kb on - strand, within PGA1_c19030at 1974.181 kb on + strand, within PGA1_c19030at 1974.197 kb on + strand, within PGA1_c19030at 1974.272 kb on + strand, within PGA1_c19030at 1974.272 kb on + strand, within PGA1_c19030at 1974.280 kb on - strand, within PGA1_c19030at 1974.355 kb on - strand, within PGA1_c19030at 1974.378 kb on - strand, within PGA1_c19030at 1974.404 kb on - strand, within PGA1_c19030at 1974.546 kb on - strand, within PGA1_c19030at 1974.660 kb on - strand, within PGA1_c19030at 1974.678 kb on + strand, within PGA1_c19030at 1974.709 kb on + strand, within PGA1_c19030at 1974.714 kb on + strand, within PGA1_c19030at 1974.851 kb on - strand, within PGA1_c19030at 1974.899 kb on - strand, within PGA1_c19030at 1975.016 kb on + strandat 1975.024 kb on - strandat 1975.026 kb on - strandat 1975.033 kb on + strandat 1975.041 kb on - strandat 1975.062 kb on - strandat 1975.121 kb on - strandat 1975.197 kb on - strandat 1975.226 kb on - strandat 1975.243 kb on + strandat 1975.251 kb on - strandat 1975.251 kb on - strandat 1975.359 kb on - strandat 1975.419 kb on - strandat 1975.483 kb on + strand, within PGA1_c19040at 1975.483 kb on + strand, within PGA1_c19040at 1975.491 kb on - strand, within PGA1_c19040at 1975.496 kb on - strand, within PGA1_c19040at 1975.511 kb on - strand, within PGA1_c19040at 1975.534 kb on - strand, within PGA1_c19040at 1975.609 kb on + strand, within PGA1_c19040at 1975.639 kb on + strand, within PGA1_c19040at 1975.640 kb on - strand, within PGA1_c19040at 1975.655 kb on - strand, within PGA1_c19040at 1975.662 kb on + strand, within PGA1_c19040at 1975.667 kb on + strand, within PGA1_c19040at 1975.670 kb on - strand, within PGA1_c19040at 1975.675 kb on - strand, within PGA1_c19040at 1975.703 kb on + strand, within PGA1_c19040at 1975.739 kb on + strand, within PGA1_c19040at 1975.746 kb on + strand, within PGA1_c19040at 1975.754 kb on - strand, within PGA1_c19040at 1975.754 kb on - strand, within PGA1_c19040at 1975.754 kb on - strand, within PGA1_c19040at 1975.835 kb on - strand, within PGA1_c19040at 1975.884 kb on + strand, within PGA1_c19040at 1975.940 kb on - strand, within PGA1_c19040at 1975.940 kb on - strand, within PGA1_c19040

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.002 mg/ml
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1,972,876 - PGA1_c19010 0.12 +0.2
1,972,927 + PGA1_c19010 0.20 +0.3
1,972,935 - PGA1_c19010 0.21 -0.4
1,972,935 - PGA1_c19010 0.21 -1.2
1,972,967 - PGA1_c19010 0.26 +0.2
1,973,048 + PGA1_c19010 0.38 -0.1
1,973,211 - PGA1_c19010 0.62 +0.3
1,973,270 - PGA1_c19010 0.71 +0.6
1,973,423 + -1.4
1,973,449 - +1.2
1,973,564 - -0.7
1,973,572 + +0.6
1,973,620 + -0.8
1,973,716 + +2.0
1,973,716 + -0.5
1,973,724 - +0.1
1,973,725 - +0.5
1,973,753 - -0.0
1,973,753 - +1.0
1,973,755 + +1.5
1,973,765 - -0.1
1,973,775 - -0.2
1,973,793 - +1.2
1,973,805 + -0.7
1,973,808 - +1.1
1,973,810 + +0.4
1,973,810 + +1.6
1,973,813 - +2.3
1,973,818 - -0.4
1,973,872 - +0.9
1,973,872 - -0.4
1,973,884 + -0.0
1,973,892 - -1.3
1,973,949 - PGA1_c19030 0.14 -0.8
1,974,005 + PGA1_c19030 0.19 +0.5
1,974,005 + PGA1_c19030 0.19 +1.2
1,974,005 + PGA1_c19030 0.19 -0.6
1,974,005 + PGA1_c19030 0.19 -0.0
1,974,008 - PGA1_c19030 0.19 -1.2
1,974,013 - PGA1_c19030 0.19 -0.6
1,974,034 + PGA1_c19030 0.21 +0.7
1,974,044 - PGA1_c19030 0.22 +1.7
1,974,071 + PGA1_c19030 0.24 -0.0
1,974,097 + PGA1_c19030 0.26 +0.8
1,974,102 - PGA1_c19030 0.26 +1.3
1,974,115 - PGA1_c19030 0.27 +1.8
1,974,127 - PGA1_c19030 0.28 +3.6
1,974,134 + PGA1_c19030 0.29 -0.1
1,974,134 + PGA1_c19030 0.29 -0.4
1,974,134 + PGA1_c19030 0.29 +0.5
1,974,134 + PGA1_c19030 0.29 +0.7
1,974,134 + PGA1_c19030 0.29 -0.3
1,974,142 - PGA1_c19030 0.29 +0.7
1,974,142 - PGA1_c19030 0.29 +1.3
1,974,181 + PGA1_c19030 0.32 -0.3
1,974,197 + PGA1_c19030 0.34 +1.3
1,974,272 + PGA1_c19030 0.39 +1.5
1,974,272 + PGA1_c19030 0.39 +0.8
1,974,280 - PGA1_c19030 0.40 +1.1
1,974,355 - PGA1_c19030 0.46 +0.3
1,974,378 - PGA1_c19030 0.48 +0.4
1,974,404 - PGA1_c19030 0.50 -0.1
1,974,546 - PGA1_c19030 0.61 +0.0
1,974,660 - PGA1_c19030 0.69 -0.8
1,974,678 + PGA1_c19030 0.71 -0.2
1,974,709 + PGA1_c19030 0.73 +0.5
1,974,714 + PGA1_c19030 0.74 +1.1
1,974,851 - PGA1_c19030 0.84 +0.3
1,974,899 - PGA1_c19030 0.88 -0.4
1,975,016 + -0.2
1,975,024 - -0.5
1,975,026 - -0.1
1,975,033 + +1.3
1,975,041 - +0.7
1,975,062 - +0.7
1,975,121 - -1.6
1,975,197 - -1.0
1,975,226 - -0.2
1,975,243 + -0.6
1,975,251 - -1.6
1,975,251 - -1.1
1,975,359 - +0.5
1,975,419 - +0.6
1,975,483 + PGA1_c19040 0.11 -0.7
1,975,483 + PGA1_c19040 0.11 +0.1
1,975,491 - PGA1_c19040 0.12 +0.3
1,975,496 - PGA1_c19040 0.12 +1.0
1,975,511 - PGA1_c19040 0.12 +0.5
1,975,534 - PGA1_c19040 0.13 -0.3
1,975,609 + PGA1_c19040 0.15 +0.4
1,975,639 + PGA1_c19040 0.15 -0.7
1,975,640 - PGA1_c19040 0.15 +0.1
1,975,655 - PGA1_c19040 0.16 +0.6
1,975,662 + PGA1_c19040 0.16 -1.2
1,975,667 + PGA1_c19040 0.16 +0.3
1,975,670 - PGA1_c19040 0.16 +0.5
1,975,675 - PGA1_c19040 0.16 +0.7
1,975,703 + PGA1_c19040 0.17 +0.9
1,975,739 + PGA1_c19040 0.18 -1.0
1,975,746 + PGA1_c19040 0.18 -0.2
1,975,754 - PGA1_c19040 0.18 +0.4
1,975,754 - PGA1_c19040 0.18 +0.4
1,975,754 - PGA1_c19040 0.18 -1.3
1,975,835 - PGA1_c19040 0.21 +0.5
1,975,884 + PGA1_c19040 0.22 +1.0
1,975,940 - PGA1_c19040 0.23 -0.8
1,975,940 - PGA1_c19040 0.23 +0.1

Or see this region's nucleotide sequence