Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c17680

Experiment: m.b. Thallium(I) acetate 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c17660 and PGA1_c17670 are separated by 57 nucleotidesPGA1_c17670 and PGA1_c17680 are separated by 126 nucleotidesPGA1_c17680 and PGA1_c17690 are separated by 450 nucleotides PGA1_c17660: PGA1_c17660 - hypothetical protein, at 1,850,229 to 1,850,417 _c17660 PGA1_c17670: PGA1_c17670 - transcriptional regulator, crp family, at 1,850,475 to 1,851,233 _c17670 PGA1_c17680: PGA1_c17680 - hypothetical protein, at 1,851,360 to 1,851,596 _c17680 PGA1_c17690: PGA1_c17690 - serine acetyltransferase CysE, at 1,852,047 to 1,852,862 _c17690 Position (kb) 1851 1852Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1850.406 kb on + strandat 1850.414 kb on - strandat 1850.460 kb on - strandat 1850.460 kb on - strandat 1850.460 kb on - strandat 1850.496 kb on - strandat 1850.609 kb on + strand, within PGA1_c17670at 1850.609 kb on + strand, within PGA1_c17670at 1850.627 kb on - strand, within PGA1_c17670at 1850.676 kb on + strand, within PGA1_c17670at 1850.676 kb on + strand, within PGA1_c17670at 1850.676 kb on + strand, within PGA1_c17670at 1850.697 kb on - strand, within PGA1_c17670at 1850.831 kb on - strand, within PGA1_c17670at 1850.831 kb on - strand, within PGA1_c17670at 1850.831 kb on - strand, within PGA1_c17670at 1850.840 kb on + strand, within PGA1_c17670at 1850.845 kb on + strand, within PGA1_c17670at 1850.848 kb on - strand, within PGA1_c17670at 1850.912 kb on + strand, within PGA1_c17670at 1850.924 kb on + strand, within PGA1_c17670at 1850.924 kb on + strand, within PGA1_c17670at 1850.924 kb on + strand, within PGA1_c17670at 1850.924 kb on + strand, within PGA1_c17670at 1850.924 kb on + strand, within PGA1_c17670at 1850.924 kb on + strand, within PGA1_c17670at 1850.924 kb on + strand, within PGA1_c17670at 1850.924 kb on + strand, within PGA1_c17670at 1850.924 kb on + strand, within PGA1_c17670at 1850.924 kb on + strand, within PGA1_c17670at 1850.924 kb on + strand, within PGA1_c17670at 1850.932 kb on - strand, within PGA1_c17670at 1850.932 kb on - strand, within PGA1_c17670at 1850.932 kb on - strand, within PGA1_c17670at 1850.932 kb on - strand, within PGA1_c17670at 1850.932 kb on - strand, within PGA1_c17670at 1850.932 kb on - strand, within PGA1_c17670at 1850.932 kb on - strand, within PGA1_c17670at 1850.932 kb on - strand, within PGA1_c17670at 1850.932 kb on - strand, within PGA1_c17670at 1850.932 kb on - strand, within PGA1_c17670at 1850.932 kb on - strand, within PGA1_c17670at 1850.932 kb on - strand, within PGA1_c17670at 1850.932 kb on - strand, within PGA1_c17670at 1850.934 kb on + strand, within PGA1_c17670at 1850.939 kb on + strand, within PGA1_c17670at 1850.939 kb on + strand, within PGA1_c17670at 1850.939 kb on + strand, within PGA1_c17670at 1850.939 kb on + strand, within PGA1_c17670at 1850.939 kb on + strand, within PGA1_c17670at 1850.949 kb on + strand, within PGA1_c17670at 1850.957 kb on - strand, within PGA1_c17670at 1851.053 kb on - strand, within PGA1_c17670at 1851.134 kb on + strand, within PGA1_c17670at 1851.134 kb on - strand, within PGA1_c17670at 1851.134 kb on - strand, within PGA1_c17670at 1851.222 kb on - strandat 1851.222 kb on - strandat 1851.223 kb on - strandat 1851.249 kb on + strandat 1851.249 kb on + strandat 1851.249 kb on + strandat 1851.249 kb on + strandat 1851.249 kb on + strandat 1851.249 kb on + strandat 1851.249 kb on + strandat 1851.249 kb on + strandat 1851.252 kb on - strandat 1851.252 kb on - strandat 1851.254 kb on + strandat 1851.257 kb on - strandat 1851.257 kb on - strandat 1851.257 kb on - strandat 1851.257 kb on - strandat 1851.257 kb on - strandat 1851.259 kb on + strandat 1851.270 kb on + strandat 1851.270 kb on + strandat 1851.270 kb on + strandat 1851.270 kb on + strandat 1851.278 kb on - strandat 1851.311 kb on - strandat 1851.388 kb on - strand, within PGA1_c17680at 1851.560 kb on + strand, within PGA1_c17680at 1851.676 kb on + strandat 1851.681 kb on + strandat 1851.682 kb on - strandat 1851.836 kb on + strandat 1851.859 kb on - strandat 1851.911 kb on + strandat 1851.954 kb on + strandat 1852.020 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.002 mg/ml
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1,850,406 + -0.9
1,850,414 - -0.0
1,850,460 - -1.2
1,850,460 - -1.6
1,850,460 - +3.2
1,850,496 - +0.2
1,850,609 + PGA1_c17670 0.18 -0.4
1,850,609 + PGA1_c17670 0.18 +0.3
1,850,627 - PGA1_c17670 0.20 -0.9
1,850,676 + PGA1_c17670 0.26 +0.1
1,850,676 + PGA1_c17670 0.26 +0.4
1,850,676 + PGA1_c17670 0.26 +0.1
1,850,697 - PGA1_c17670 0.29 -0.5
1,850,831 - PGA1_c17670 0.47 +1.1
1,850,831 - PGA1_c17670 0.47 -0.5
1,850,831 - PGA1_c17670 0.47 +0.9
1,850,840 + PGA1_c17670 0.48 -2.2
1,850,845 + PGA1_c17670 0.49 -2.0
1,850,848 - PGA1_c17670 0.49 -0.0
1,850,912 + PGA1_c17670 0.58 +0.5
1,850,924 + PGA1_c17670 0.59 +1.1
1,850,924 + PGA1_c17670 0.59 +1.5
1,850,924 + PGA1_c17670 0.59 -0.2
1,850,924 + PGA1_c17670 0.59 +0.3
1,850,924 + PGA1_c17670 0.59 -0.1
1,850,924 + PGA1_c17670 0.59 -1.3
1,850,924 + PGA1_c17670 0.59 +0.2
1,850,924 + PGA1_c17670 0.59 -1.2
1,850,924 + PGA1_c17670 0.59 +1.0
1,850,924 + PGA1_c17670 0.59 +0.3
1,850,924 + PGA1_c17670 0.59 -0.8
1,850,932 - PGA1_c17670 0.60 -1.3
1,850,932 - PGA1_c17670 0.60 -1.0
1,850,932 - PGA1_c17670 0.60 +2.7
1,850,932 - PGA1_c17670 0.60 +0.3
1,850,932 - PGA1_c17670 0.60 +0.3
1,850,932 - PGA1_c17670 0.60 +0.3
1,850,932 - PGA1_c17670 0.60 +0.4
1,850,932 - PGA1_c17670 0.60 -0.0
1,850,932 - PGA1_c17670 0.60 +0.3
1,850,932 - PGA1_c17670 0.60 +0.8
1,850,932 - PGA1_c17670 0.60 +0.5
1,850,932 - PGA1_c17670 0.60 +0.3
1,850,932 - PGA1_c17670 0.60 -1.6
1,850,934 + PGA1_c17670 0.60 -1.1
1,850,939 + PGA1_c17670 0.61 -1.5
1,850,939 + PGA1_c17670 0.61 -0.3
1,850,939 + PGA1_c17670 0.61 -0.6
1,850,939 + PGA1_c17670 0.61 +0.8
1,850,939 + PGA1_c17670 0.61 -1.4
1,850,949 + PGA1_c17670 0.62 -1.5
1,850,957 - PGA1_c17670 0.64 +0.7
1,851,053 - PGA1_c17670 0.76 -1.0
1,851,134 + PGA1_c17670 0.87 -0.2
1,851,134 - PGA1_c17670 0.87 -0.5
1,851,134 - PGA1_c17670 0.87 +0.0
1,851,222 - -1.3
1,851,222 - -2.0
1,851,223 - +0.0
1,851,249 + +0.5
1,851,249 + +0.1
1,851,249 + +1.5
1,851,249 + -0.3
1,851,249 + +0.1
1,851,249 + +0.2
1,851,249 + +0.5
1,851,249 + -1.5
1,851,252 - +0.1
1,851,252 - +0.1
1,851,254 + +1.0
1,851,257 - -0.1
1,851,257 - +0.2
1,851,257 - +1.2
1,851,257 - -0.3
1,851,257 - +0.5
1,851,259 + +0.2
1,851,270 + +2.1
1,851,270 + +0.3
1,851,270 + -0.4
1,851,270 + +0.1
1,851,278 - +0.1
1,851,311 - -1.8
1,851,388 - PGA1_c17680 0.12 +0.8
1,851,560 + PGA1_c17680 0.84 +1.0
1,851,676 + -0.5
1,851,681 + -0.5
1,851,682 - +0.4
1,851,836 + -0.0
1,851,859 - -0.7
1,851,911 + -0.8
1,851,954 + +0.5
1,852,020 - -0.4

Or see this region's nucleotide sequence