Experiment: Glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1573 and HP15_1574 are separated by 10 nucleotides HP15_1574 and HP15_1575 are separated by 136 nucleotides
HP15_1573: HP15_1573 - formate dehydrogenase, beta subunit, at 1,654,200 to 1,655,915
_1573
HP15_1574: HP15_1574 - formate dehydrogenase, alpha subunit, at 1,655,926 to 1,658,817
_1574
HP15_1575: HP15_1575 - metallophosphoesterase, at 1,658,954 to 1,660,075
_1575
Position (kb)
1655
1656
1657
1658
1659 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1654.947 kb on + strand, within HP15_1573 at 1654.987 kb on - strand, within HP15_1573 at 1654.998 kb on - strand, within HP15_1573 at 1655.055 kb on + strand, within HP15_1573 at 1655.292 kb on - strand, within HP15_1573 at 1655.455 kb on + strand, within HP15_1573 at 1655.455 kb on + strand, within HP15_1573 at 1655.455 kb on + strand, within HP15_1573 at 1655.463 kb on - strand, within HP15_1573 at 1655.463 kb on - strand, within HP15_1573 at 1655.492 kb on + strand, within HP15_1573 at 1655.499 kb on + strand, within HP15_1573 at 1655.603 kb on - strand, within HP15_1573 at 1655.634 kb on - strand, within HP15_1573 at 1655.708 kb on + strand, within HP15_1573 at 1655.716 kb on - strand, within HP15_1573 at 1655.880 kb on + strand at 1655.898 kb on - strand at 1655.918 kb on - strand at 1656.011 kb on + strand at 1656.364 kb on - strand, within HP15_1574 at 1656.484 kb on - strand, within HP15_1574 at 1656.500 kb on + strand, within HP15_1574 at 1656.538 kb on - strand, within HP15_1574 at 1656.538 kb on - strand, within HP15_1574 at 1656.587 kb on - strand, within HP15_1574 at 1656.673 kb on - strand, within HP15_1574 at 1656.725 kb on + strand, within HP15_1574 at 1656.756 kb on + strand, within HP15_1574 at 1656.825 kb on + strand, within HP15_1574 at 1656.833 kb on - strand, within HP15_1574 at 1656.839 kb on + strand, within HP15_1574 at 1656.847 kb on - strand, within HP15_1574 at 1656.852 kb on - strand, within HP15_1574 at 1657.176 kb on + strand, within HP15_1574 at 1657.214 kb on + strand, within HP15_1574 at 1657.336 kb on + strand, within HP15_1574 at 1657.354 kb on + strand, within HP15_1574 at 1657.448 kb on - strand, within HP15_1574 at 1657.550 kb on + strand, within HP15_1574 at 1657.568 kb on - strand, within HP15_1574 at 1657.577 kb on + strand, within HP15_1574 at 1657.674 kb on - strand, within HP15_1574 at 1657.747 kb on - strand, within HP15_1574 at 1657.762 kb on + strand, within HP15_1574 at 1657.998 kb on - strand, within HP15_1574 at 1658.203 kb on + strand, within HP15_1574 at 1658.474 kb on - strand, within HP15_1574 at 1658.479 kb on + strand, within HP15_1574 at 1658.479 kb on + strand, within HP15_1574 at 1658.545 kb on - strand at 1658.545 kb on - strand at 1658.554 kb on + strand at 1658.760 kb on - strand at 1658.813 kb on - strand at 1658.962 kb on + strand at 1658.981 kb on - strand at 1659.024 kb on + strand at 1659.032 kb on - strand at 1659.128 kb on + strand, within HP15_1575 at 1659.137 kb on - strand, within HP15_1575 at 1659.239 kb on + strand, within HP15_1575 at 1659.336 kb on - strand, within HP15_1575 at 1659.358 kb on + strand, within HP15_1575 at 1659.358 kb on + strand, within HP15_1575 at 1659.388 kb on + strand, within HP15_1575 at 1659.434 kb on + strand, within HP15_1575 at 1659.434 kb on + strand, within HP15_1575 at 1659.436 kb on - strand, within HP15_1575 at 1659.442 kb on - strand, within HP15_1575 at 1659.446 kb on + strand, within HP15_1575 at 1659.446 kb on + strand, within HP15_1575 at 1659.525 kb on + strand, within HP15_1575 at 1659.549 kb on + strand, within HP15_1575 at 1659.549 kb on + strand, within HP15_1575 at 1659.557 kb on - strand, within HP15_1575 at 1659.557 kb on - strand, within HP15_1575 at 1659.659 kb on - strand, within HP15_1575 at 1659.665 kb on - strand, within HP15_1575 at 1659.737 kb on + strand, within HP15_1575 at 1659.768 kb on - strand, within HP15_1575 at 1659.768 kb on - strand, within HP15_1575
Per-strain Table
Position Strand Gene LocusTag Fraction Glycerol remove 1,654,947 + HP15_1573 0.44 -0.2 1,654,987 - HP15_1573 0.46 +0.2 1,654,998 - HP15_1573 0.47 +0.4 1,655,055 + HP15_1573 0.50 -0.5 1,655,292 - HP15_1573 0.64 +0.6 1,655,455 + HP15_1573 0.73 +0.1 1,655,455 + HP15_1573 0.73 -0.4 1,655,455 + HP15_1573 0.73 +0.5 1,655,463 - HP15_1573 0.74 -0.8 1,655,463 - HP15_1573 0.74 -1.0 1,655,492 + HP15_1573 0.75 +0.4 1,655,499 + HP15_1573 0.76 -0.5 1,655,603 - HP15_1573 0.82 -0.4 1,655,634 - HP15_1573 0.84 -0.2 1,655,708 + HP15_1573 0.88 -1.4 1,655,716 - HP15_1573 0.88 -0.1 1,655,880 + -0.1 1,655,898 - -0.1 1,655,918 - +0.6 1,656,011 + +1.0 1,656,364 - HP15_1574 0.15 -0.1 1,656,484 - HP15_1574 0.19 -0.5 1,656,500 + HP15_1574 0.20 +0.3 1,656,538 - HP15_1574 0.21 -2.0 1,656,538 - HP15_1574 0.21 +0.6 1,656,587 - HP15_1574 0.23 -0.2 1,656,673 - HP15_1574 0.26 -0.4 1,656,725 + HP15_1574 0.28 -2.2 1,656,756 + HP15_1574 0.29 +0.5 1,656,825 + HP15_1574 0.31 -0.6 1,656,833 - HP15_1574 0.31 +0.2 1,656,839 + HP15_1574 0.32 -0.4 1,656,847 - HP15_1574 0.32 +0.6 1,656,852 - HP15_1574 0.32 +0.8 1,657,176 + HP15_1574 0.43 +0.0 1,657,214 + HP15_1574 0.45 +0.0 1,657,336 + HP15_1574 0.49 +1.4 1,657,354 + HP15_1574 0.49 -0.1 1,657,448 - HP15_1574 0.53 -0.4 1,657,550 + HP15_1574 0.56 -0.2 1,657,568 - HP15_1574 0.57 -0.3 1,657,577 + HP15_1574 0.57 +0.6 1,657,674 - HP15_1574 0.60 +0.9 1,657,747 - HP15_1574 0.63 +1.2 1,657,762 + HP15_1574 0.63 +1.2 1,657,998 - HP15_1574 0.72 -0.3 1,658,203 + HP15_1574 0.79 +1.4 1,658,474 - HP15_1574 0.88 +0.0 1,658,479 + HP15_1574 0.88 +0.8 1,658,479 + HP15_1574 0.88 -0.4 1,658,545 - -0.3 1,658,545 - +0.1 1,658,554 + -0.0 1,658,760 - -0.2 1,658,813 - -0.1 1,658,962 + -0.4 1,658,981 - -0.7 1,659,024 + +1.0 1,659,032 - -1.3 1,659,128 + HP15_1575 0.16 -2.8 1,659,137 - HP15_1575 0.16 +0.6 1,659,239 + HP15_1575 0.25 +0.2 1,659,336 - HP15_1575 0.34 +0.3 1,659,358 + HP15_1575 0.36 -0.9 1,659,358 + HP15_1575 0.36 +0.3 1,659,388 + HP15_1575 0.39 -0.8 1,659,434 + HP15_1575 0.43 +2.2 1,659,434 + HP15_1575 0.43 -0.3 1,659,436 - HP15_1575 0.43 -0.4 1,659,442 - HP15_1575 0.43 -1.1 1,659,446 + HP15_1575 0.44 -0.4 1,659,446 + HP15_1575 0.44 -0.8 1,659,525 + HP15_1575 0.51 -0.4 1,659,549 + HP15_1575 0.53 -1.0 1,659,549 + HP15_1575 0.53 -0.4 1,659,557 - HP15_1575 0.54 +0.3 1,659,557 - HP15_1575 0.54 -1.0 1,659,659 - HP15_1575 0.63 +1.4 1,659,665 - HP15_1575 0.63 -0.2 1,659,737 + HP15_1575 0.70 -1.4 1,659,768 - HP15_1575 0.73 -0.0 1,659,768 - HP15_1575 0.73 -0.1
Or see this region's nucleotide sequence