Experiment: m.b. Thallium(I) acetate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c16180 and PGA1_c16190 are separated by 320 nucleotides PGA1_c16190 and PGA1_c16200 are separated by 198 nucleotides
PGA1_c16180: PGA1_c16180 - TRAP transporter solute receptor, TAXI family, at 1,680,189 to 1,681,154
_c16180
PGA1_c16190: PGA1_c16190 - hypothetical protein, at 1,681,475 to 1,681,654
_c16190
PGA1_c16200: PGA1_c16200 - molybdopterin dehydrogenase, FAD-binding, at 1,681,853 to 1,682,719
_c16200
Position (kb)
1681
1682 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1680.574 kb on + strand, within PGA1_c16180 at 1680.574 kb on + strand, within PGA1_c16180 at 1680.574 kb on + strand, within PGA1_c16180 at 1680.582 kb on - strand, within PGA1_c16180 at 1680.582 kb on - strand, within PGA1_c16180 at 1680.604 kb on - strand, within PGA1_c16180 at 1680.689 kb on - strand, within PGA1_c16180 at 1680.799 kb on + strand, within PGA1_c16180 at 1680.950 kb on - strand, within PGA1_c16180 at 1681.094 kb on - strand at 1681.139 kb on + strand at 1681.149 kb on + strand at 1681.157 kb on - strand at 1681.157 kb on - strand at 1681.158 kb on - strand at 1681.227 kb on - strand at 1681.289 kb on + strand at 1681.296 kb on - strand at 1681.323 kb on - strand at 1681.325 kb on + strand at 1681.326 kb on + strand at 1681.333 kb on - strand at 1681.333 kb on - strand at 1681.366 kb on - strand at 1681.372 kb on - strand at 1681.423 kb on - strand at 1681.468 kb on - strand at 1681.473 kb on + strand at 1681.535 kb on - strand, within PGA1_c16190 at 1681.535 kb on - strand, within PGA1_c16190 at 1681.557 kb on - strand, within PGA1_c16190 at 1681.713 kb on - strand at 1681.747 kb on + strand at 1681.747 kb on + strand at 1681.836 kb on + strand at 1681.913 kb on + strand at 1681.914 kb on - strand at 1681.920 kb on + strand at 1681.921 kb on - strand at 1681.928 kb on - strand at 1682.091 kb on + strand, within PGA1_c16200 at 1682.098 kb on + strand, within PGA1_c16200 at 1682.113 kb on + strand, within PGA1_c16200 at 1682.135 kb on + strand, within PGA1_c16200 at 1682.156 kb on + strand, within PGA1_c16200 at 1682.156 kb on + strand, within PGA1_c16200 at 1682.164 kb on - strand, within PGA1_c16200 at 1682.188 kb on + strand, within PGA1_c16200 at 1682.204 kb on + strand, within PGA1_c16200 at 1682.204 kb on + strand, within PGA1_c16200 at 1682.212 kb on - strand, within PGA1_c16200 at 1682.267 kb on - strand, within PGA1_c16200 at 1682.285 kb on + strand, within PGA1_c16200 at 1682.338 kb on + strand, within PGA1_c16200 at 1682.338 kb on + strand, within PGA1_c16200 at 1682.338 kb on + strand, within PGA1_c16200 at 1682.351 kb on - strand, within PGA1_c16200 at 1682.372 kb on + strand, within PGA1_c16200 at 1682.372 kb on + strand, within PGA1_c16200 at 1682.380 kb on - strand, within PGA1_c16200 at 1682.380 kb on - strand, within PGA1_c16200 at 1682.380 kb on - strand, within PGA1_c16200 at 1682.380 kb on - strand, within PGA1_c16200 at 1682.414 kb on - strand, within PGA1_c16200 at 1682.426 kb on + strand, within PGA1_c16200 at 1682.524 kb on + strand, within PGA1_c16200 at 1682.524 kb on + strand, within PGA1_c16200 at 1682.524 kb on + strand, within PGA1_c16200 at 1682.529 kb on + strand, within PGA1_c16200 at 1682.532 kb on - strand, within PGA1_c16200 at 1682.581 kb on + strand, within PGA1_c16200
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.002 mg/ml remove 1,680,574 + PGA1_c16180 0.40 -0.1 1,680,574 + PGA1_c16180 0.40 +0.9 1,680,574 + PGA1_c16180 0.40 +0.3 1,680,582 - PGA1_c16180 0.41 +1.0 1,680,582 - PGA1_c16180 0.41 -0.4 1,680,604 - PGA1_c16180 0.43 +1.6 1,680,689 - PGA1_c16180 0.52 +0.3 1,680,799 + PGA1_c16180 0.63 +0.6 1,680,950 - PGA1_c16180 0.79 +0.2 1,681,094 - +0.4 1,681,139 + +0.9 1,681,149 + +0.5 1,681,157 - +0.3 1,681,157 - +0.6 1,681,158 - -0.4 1,681,227 - +1.0 1,681,289 + +1.3 1,681,296 - +0.0 1,681,323 - +0.6 1,681,325 + +1.0 1,681,326 + +0.8 1,681,333 - -0.4 1,681,333 - +0.3 1,681,366 - -0.0 1,681,372 - -1.0 1,681,423 - +1.1 1,681,468 - -0.3 1,681,473 + -0.7 1,681,535 - PGA1_c16190 0.33 +0.6 1,681,535 - PGA1_c16190 0.33 +1.3 1,681,557 - PGA1_c16190 0.46 +0.3 1,681,713 - +1.4 1,681,747 + -1.0 1,681,747 + -0.0 1,681,836 + -0.6 1,681,913 + -1.1 1,681,914 - +0.1 1,681,920 + -1.6 1,681,921 - +0.1 1,681,928 - -0.5 1,682,091 + PGA1_c16200 0.27 -0.1 1,682,098 + PGA1_c16200 0.28 +4.2 1,682,113 + PGA1_c16200 0.30 -0.4 1,682,135 + PGA1_c16200 0.33 -0.9 1,682,156 + PGA1_c16200 0.35 -1.2 1,682,156 + PGA1_c16200 0.35 +1.1 1,682,164 - PGA1_c16200 0.36 +0.1 1,682,188 + PGA1_c16200 0.39 +0.7 1,682,204 + PGA1_c16200 0.40 +0.6 1,682,204 + PGA1_c16200 0.40 +0.3 1,682,212 - PGA1_c16200 0.41 -0.7 1,682,267 - PGA1_c16200 0.48 -1.6 1,682,285 + PGA1_c16200 0.50 +0.3 1,682,338 + PGA1_c16200 0.56 +0.6 1,682,338 + PGA1_c16200 0.56 +0.8 1,682,338 + PGA1_c16200 0.56 -0.4 1,682,351 - PGA1_c16200 0.57 +0.4 1,682,372 + PGA1_c16200 0.60 -0.4 1,682,372 + PGA1_c16200 0.60 -0.3 1,682,380 - PGA1_c16200 0.61 +0.9 1,682,380 - PGA1_c16200 0.61 -0.0 1,682,380 - PGA1_c16200 0.61 -1.9 1,682,380 - PGA1_c16200 0.61 -0.7 1,682,414 - PGA1_c16200 0.65 -1.3 1,682,426 + PGA1_c16200 0.66 +0.0 1,682,524 + PGA1_c16200 0.77 +0.1 1,682,524 + PGA1_c16200 0.77 -0.9 1,682,524 + PGA1_c16200 0.77 -0.1 1,682,529 + PGA1_c16200 0.78 -1.3 1,682,532 - PGA1_c16200 0.78 +0.4 1,682,581 + PGA1_c16200 0.84 -0.1
Or see this region's nucleotide sequence