Experiment: m.b. Thallium(I) acetate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c14950 and PGA1_c14960 are separated by 65 nucleotides PGA1_c14960 and PGA1_c14970 are separated by 153 nucleotides PGA1_c14970 and PGA1_c14980 are separated by 136 nucleotides PGA1_c14980 and PGA1_c14990 overlap by 4 nucleotides
PGA1_c14950: PGA1_c14950 - putative long-chain-fatty-acid-CoA ligase, at 1,554,361 to 1,555,968
_c14950
PGA1_c14960: PGA1_c14960 - putative transcriptional regulator, at 1,556,034 to 1,556,657
_c14960
PGA1_c14970: PGA1_c14970 - hypothetical protein, at 1,556,811 to 1,557,041
_c14970
PGA1_c14980: PGA1_c14980 - putative major intrinsic protein, at 1,557,178 to 1,557,834
_c14980
PGA1_c14990: PGA1_c14990 - putative protein ArsC, at 1,557,831 to 1,558,307
_c14990
Position (kb)
1556
1557
1558 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1555.831 kb on - strand at 1555.923 kb on + strand at 1555.923 kb on + strand at 1555.923 kb on + strand at 1555.961 kb on + strand at 1556.222 kb on + strand, within PGA1_c14960 at 1556.233 kb on + strand, within PGA1_c14960 at 1556.249 kb on - strand, within PGA1_c14960 at 1556.320 kb on - strand, within PGA1_c14960 at 1556.341 kb on - strand, within PGA1_c14960 at 1556.351 kb on - strand, within PGA1_c14960 at 1556.355 kb on + strand, within PGA1_c14960 at 1556.357 kb on - strand, within PGA1_c14960 at 1556.522 kb on + strand, within PGA1_c14960 at 1556.666 kb on - strand at 1556.704 kb on + strand at 1556.744 kb on + strand at 1556.753 kb on + strand at 1556.761 kb on + strand at 1556.761 kb on + strand at 1556.761 kb on + strand at 1556.761 kb on + strand at 1556.761 kb on + strand at 1556.769 kb on - strand at 1556.769 kb on - strand at 1556.769 kb on - strand at 1556.769 kb on - strand at 1556.769 kb on - strand at 1556.804 kb on + strand at 1556.804 kb on + strand at 1556.804 kb on + strand at 1556.809 kb on + strand at 1556.812 kb on - strand at 1556.812 kb on - strand at 1556.812 kb on - strand at 1556.851 kb on + strand, within PGA1_c14970 at 1556.859 kb on - strand, within PGA1_c14970 at 1556.859 kb on - strand, within PGA1_c14970 at 1557.037 kb on + strand at 1557.037 kb on + strand at 1557.037 kb on + strand at 1557.043 kb on + strand at 1557.045 kb on - strand at 1557.045 kb on - strand at 1557.164 kb on + strand at 1557.172 kb on - strand at 1557.172 kb on - strand at 1557.172 kb on - strand at 1557.219 kb on + strand at 1557.235 kb on - strand at 1557.255 kb on + strand, within PGA1_c14980 at 1557.258 kb on - strand, within PGA1_c14980 at 1557.263 kb on - strand, within PGA1_c14980 at 1557.266 kb on + strand, within PGA1_c14980 at 1557.274 kb on - strand, within PGA1_c14980 at 1557.274 kb on - strand, within PGA1_c14980 at 1557.274 kb on - strand, within PGA1_c14980 at 1557.274 kb on - strand, within PGA1_c14980 at 1557.353 kb on - strand, within PGA1_c14980 at 1557.387 kb on - strand, within PGA1_c14980 at 1557.387 kb on - strand, within PGA1_c14980 at 1557.395 kb on + strand, within PGA1_c14980 at 1557.395 kb on + strand, within PGA1_c14980 at 1557.480 kb on + strand, within PGA1_c14980 at 1557.489 kb on - strand, within PGA1_c14980 at 1557.569 kb on + strand, within PGA1_c14980 at 1557.569 kb on + strand, within PGA1_c14980 at 1557.577 kb on - strand, within PGA1_c14980 at 1557.598 kb on - strand, within PGA1_c14980 at 1557.619 kb on + strand, within PGA1_c14980 at 1557.637 kb on + strand, within PGA1_c14980 at 1557.776 kb on + strand at 1557.794 kb on - strand at 1557.807 kb on - strand at 1557.829 kb on + strand at 1557.885 kb on - strand, within PGA1_c14990 at 1557.932 kb on + strand, within PGA1_c14990 at 1557.940 kb on - strand, within PGA1_c14990 at 1557.941 kb on - strand, within PGA1_c14990 at 1557.941 kb on - strand, within PGA1_c14990 at 1558.021 kb on - strand, within PGA1_c14990 at 1558.038 kb on + strand, within PGA1_c14990 at 1558.038 kb on + strand, within PGA1_c14990
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.002 mg/ml remove 1,555,831 - -0.1 1,555,923 + -0.7 1,555,923 + -0.2 1,555,923 + -1.0 1,555,961 + +0.5 1,556,222 + PGA1_c14960 0.30 -0.2 1,556,233 + PGA1_c14960 0.32 +0.6 1,556,249 - PGA1_c14960 0.34 -1.4 1,556,320 - PGA1_c14960 0.46 +0.3 1,556,341 - PGA1_c14960 0.49 -1.5 1,556,351 - PGA1_c14960 0.51 -0.7 1,556,355 + PGA1_c14960 0.51 -0.4 1,556,357 - PGA1_c14960 0.52 +1.7 1,556,522 + PGA1_c14960 0.78 +1.8 1,556,666 - -0.3 1,556,704 + +1.4 1,556,744 + +1.0 1,556,753 + -0.2 1,556,761 + +1.0 1,556,761 + +0.6 1,556,761 + -0.6 1,556,761 + -0.1 1,556,761 + +0.9 1,556,769 - -0.7 1,556,769 - -2.9 1,556,769 - +0.6 1,556,769 - -0.3 1,556,769 - +0.9 1,556,804 + -0.5 1,556,804 + +0.3 1,556,804 + +1.5 1,556,809 + -1.1 1,556,812 - -0.5 1,556,812 - +2.8 1,556,812 - +0.2 1,556,851 + PGA1_c14970 0.17 -2.0 1,556,859 - PGA1_c14970 0.21 +0.8 1,556,859 - PGA1_c14970 0.21 +1.5 1,557,037 + -0.9 1,557,037 + +1.0 1,557,037 + -0.1 1,557,043 + -0.2 1,557,045 - -0.4 1,557,045 - +1.4 1,557,164 + +0.6 1,557,172 - +1.5 1,557,172 - +1.4 1,557,172 - +1.8 1,557,219 + +0.8 1,557,235 - -1.2 1,557,255 + PGA1_c14980 0.12 -0.8 1,557,258 - PGA1_c14980 0.12 -0.1 1,557,263 - PGA1_c14980 0.13 +1.1 1,557,266 + PGA1_c14980 0.13 +1.6 1,557,274 - PGA1_c14980 0.15 -0.4 1,557,274 - PGA1_c14980 0.15 -1.0 1,557,274 - PGA1_c14980 0.15 -0.4 1,557,274 - PGA1_c14980 0.15 -0.3 1,557,353 - PGA1_c14980 0.27 +0.9 1,557,387 - PGA1_c14980 0.32 -0.9 1,557,387 - PGA1_c14980 0.32 -1.4 1,557,395 + PGA1_c14980 0.33 +0.5 1,557,395 + PGA1_c14980 0.33 +0.4 1,557,480 + PGA1_c14980 0.46 -1.0 1,557,489 - PGA1_c14980 0.47 +0.6 1,557,569 + PGA1_c14980 0.60 -1.3 1,557,569 + PGA1_c14980 0.60 -0.5 1,557,577 - PGA1_c14980 0.61 -0.2 1,557,598 - PGA1_c14980 0.64 +0.4 1,557,619 + PGA1_c14980 0.67 +0.5 1,557,637 + PGA1_c14980 0.70 -0.7 1,557,776 + +0.9 1,557,794 - -1.2 1,557,807 - +0.5 1,557,829 + -0.0 1,557,885 - PGA1_c14990 0.11 -1.0 1,557,932 + PGA1_c14990 0.21 +1.0 1,557,940 - PGA1_c14990 0.23 -0.8 1,557,941 - PGA1_c14990 0.23 +0.3 1,557,941 - PGA1_c14990 0.23 +0.3 1,558,021 - PGA1_c14990 0.40 -0.7 1,558,038 + PGA1_c14990 0.43 -0.1 1,558,038 + PGA1_c14990 0.43 +1.0
Or see this region's nucleotide sequence