Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c14020

Experiment: m.b. Thallium(I) acetate 0.002 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c14010 and PGA1_c14020 are separated by 501 nucleotidesPGA1_c14020 and PGA1_c14030 are separated by 11 nucleotidesPGA1_c14030 and PGA1_c14040 are separated by 246 nucleotides PGA1_c14010: PGA1_c14010 - Xylulose kinase (EC 2.7.1.17) (from data), at 1,450,010 to 1,451,446 _c14010 PGA1_c14020: PGA1_c14020 - hypothetical protein, at 1,451,948 to 1,452,565 _c14020 PGA1_c14030: PGA1_c14030 - Uncharacterized MobA-related protein, at 1,452,577 to 1,453,203 _c14030 PGA1_c14040: PGA1_c14040 - dimethylglycine dehydrogenase DmgdH, at 1,453,450 to 1,455,867 _c14040 Position (kb) 1451 1452 1453Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1451.084 kb on + strand, within PGA1_c14010at 1451.092 kb on - strand, within PGA1_c14010at 1451.109 kb on - strand, within PGA1_c14010at 1451.123 kb on - strand, within PGA1_c14010at 1451.123 kb on - strand, within PGA1_c14010at 1451.133 kb on + strand, within PGA1_c14010at 1451.133 kb on + strand, within PGA1_c14010at 1451.133 kb on + strand, within PGA1_c14010at 1451.141 kb on - strand, within PGA1_c14010at 1451.141 kb on - strand, within PGA1_c14010at 1451.146 kb on + strand, within PGA1_c14010at 1451.154 kb on - strand, within PGA1_c14010at 1451.219 kb on - strand, within PGA1_c14010at 1451.239 kb on - strand, within PGA1_c14010at 1451.254 kb on + strand, within PGA1_c14010at 1451.322 kb on - strandat 1451.407 kb on - strandat 1451.438 kb on - strandat 1451.558 kb on + strandat 1451.560 kb on - strandat 1451.566 kb on - strandat 1451.594 kb on + strandat 1451.597 kb on - strandat 1451.604 kb on - strandat 1451.686 kb on + strandat 1451.751 kb on - strandat 1451.765 kb on - strandat 1451.809 kb on + strandat 1451.811 kb on + strandat 1451.817 kb on - strandat 1451.821 kb on + strandat 1451.821 kb on + strandat 1451.824 kb on - strandat 1451.824 kb on - strandat 1451.824 kb on - strandat 1451.824 kb on - strandat 1451.824 kb on - strandat 1451.824 kb on - strandat 1451.829 kb on - strandat 1451.831 kb on + strandat 1451.840 kb on - strandat 1451.864 kb on + strandat 1451.864 kb on + strandat 1451.864 kb on + strandat 1451.864 kb on + strandat 1451.864 kb on + strandat 1451.864 kb on + strandat 1451.864 kb on + strandat 1451.864 kb on + strandat 1451.864 kb on + strandat 1451.864 kb on + strandat 1451.864 kb on + strandat 1451.864 kb on + strandat 1451.864 kb on + strandat 1451.864 kb on + strandat 1451.872 kb on - strandat 1451.872 kb on - strandat 1451.872 kb on - strandat 1451.872 kb on - strandat 1451.872 kb on - strandat 1451.872 kb on - strandat 1451.872 kb on - strandat 1451.872 kb on - strandat 1451.872 kb on - strandat 1451.872 kb on - strandat 1451.872 kb on - strandat 1451.872 kb on - strandat 1451.872 kb on - strandat 1451.872 kb on - strandat 1451.872 kb on - strandat 1451.872 kb on - strandat 1451.884 kb on - strandat 1451.903 kb on + strandat 1451.954 kb on - strandat 1451.988 kb on - strandat 1452.015 kb on + strand, within PGA1_c14020at 1452.021 kb on - strand, within PGA1_c14020at 1452.023 kb on - strand, within PGA1_c14020at 1452.125 kb on + strand, within PGA1_c14020at 1452.213 kb on + strand, within PGA1_c14020at 1452.213 kb on + strand, within PGA1_c14020at 1452.213 kb on + strand, within PGA1_c14020at 1452.216 kb on - strand, within PGA1_c14020at 1452.221 kb on - strand, within PGA1_c14020at 1452.221 kb on - strand, within PGA1_c14020at 1452.221 kb on - strand, within PGA1_c14020at 1452.221 kb on - strand, within PGA1_c14020at 1452.221 kb on - strand, within PGA1_c14020at 1452.221 kb on - strand, within PGA1_c14020at 1452.221 kb on - strand, within PGA1_c14020at 1452.221 kb on - strand, within PGA1_c14020at 1452.258 kb on + strand, within PGA1_c14020at 1452.266 kb on - strand, within PGA1_c14020at 1452.293 kb on + strand, within PGA1_c14020at 1452.307 kb on + strand, within PGA1_c14020at 1452.315 kb on - strand, within PGA1_c14020at 1452.315 kb on - strand, within PGA1_c14020at 1452.315 kb on - strand, within PGA1_c14020at 1452.315 kb on - strand, within PGA1_c14020at 1452.315 kb on - strand, within PGA1_c14020at 1452.320 kb on - strand, within PGA1_c14020at 1452.379 kb on - strand, within PGA1_c14020at 1452.405 kb on - strand, within PGA1_c14020at 1452.435 kb on + strand, within PGA1_c14020at 1452.515 kb on - strandat 1452.515 kb on - strandat 1452.574 kb on + strandat 1452.607 kb on + strandat 1452.617 kb on + strandat 1452.617 kb on + strandat 1452.617 kb on + strandat 1452.617 kb on + strandat 1452.617 kb on + strandat 1452.617 kb on + strandat 1452.622 kb on + strandat 1452.624 kb on + strandat 1452.624 kb on + strandat 1452.744 kb on + strand, within PGA1_c14030at 1452.836 kb on + strand, within PGA1_c14030at 1452.972 kb on - strand, within PGA1_c14030at 1453.061 kb on - strand, within PGA1_c14030at 1453.104 kb on - strand, within PGA1_c14030at 1453.163 kb on - strandat 1453.175 kb on + strandat 1453.357 kb on + strandat 1453.357 kb on + strandat 1453.357 kb on + strandat 1453.391 kb on + strandat 1453.493 kb on + strandat 1453.565 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.002 mg/ml
remove
1,451,084 + PGA1_c14010 0.75 +1.0
1,451,092 - PGA1_c14010 0.75 +0.0
1,451,109 - PGA1_c14010 0.76 +1.1
1,451,123 - PGA1_c14010 0.77 +0.1
1,451,123 - PGA1_c14010 0.77 -0.4
1,451,133 + PGA1_c14010 0.78 -0.9
1,451,133 + PGA1_c14010 0.78 +0.8
1,451,133 + PGA1_c14010 0.78 +0.5
1,451,141 - PGA1_c14010 0.79 -0.1
1,451,141 - PGA1_c14010 0.79 +0.0
1,451,146 + PGA1_c14010 0.79 -0.6
1,451,154 - PGA1_c14010 0.80 -1.0
1,451,219 - PGA1_c14010 0.84 +0.6
1,451,239 - PGA1_c14010 0.86 +0.3
1,451,254 + PGA1_c14010 0.87 -0.4
1,451,322 - -0.7
1,451,407 - -0.6
1,451,438 - -0.3
1,451,558 + -1.1
1,451,560 - -0.8
1,451,566 - -1.2
1,451,594 + -0.3
1,451,597 - +1.0
1,451,604 - -0.8
1,451,686 + -0.2
1,451,751 - -1.9
1,451,765 - -0.4
1,451,809 + -1.2
1,451,811 + -2.1
1,451,817 - +0.6
1,451,821 + -0.7
1,451,821 + -1.2
1,451,824 - +0.4
1,451,824 - -2.6
1,451,824 - -2.2
1,451,824 - -0.2
1,451,824 - -1.2
1,451,824 - +0.9
1,451,829 - +0.1
1,451,831 + -0.1
1,451,840 - -0.8
1,451,864 + -1.3
1,451,864 + +0.3
1,451,864 + -1.3
1,451,864 + -0.5
1,451,864 + -0.5
1,451,864 + -1.0
1,451,864 + +0.6
1,451,864 + -0.6
1,451,864 + -0.5
1,451,864 + -0.4
1,451,864 + -0.6
1,451,864 + -0.6
1,451,864 + +0.0
1,451,864 + -4.0
1,451,872 - -2.4
1,451,872 - -0.4
1,451,872 - -0.1
1,451,872 - +0.0
1,451,872 - +0.6
1,451,872 - +0.5
1,451,872 - +0.0
1,451,872 - +0.1
1,451,872 - -0.5
1,451,872 - -0.1
1,451,872 - +0.4
1,451,872 - +0.0
1,451,872 - +0.5
1,451,872 - -0.6
1,451,872 - -0.2
1,451,872 - +0.5
1,451,884 - -0.1
1,451,903 + -1.1
1,451,954 - -1.0
1,451,988 - -1.2
1,452,015 + PGA1_c14020 0.11 -0.8
1,452,021 - PGA1_c14020 0.12 +0.5
1,452,023 - PGA1_c14020 0.12 -1.1
1,452,125 + PGA1_c14020 0.29 +0.8
1,452,213 + PGA1_c14020 0.43 -0.0
1,452,213 + PGA1_c14020 0.43 -1.1
1,452,213 + PGA1_c14020 0.43 -0.3
1,452,216 - PGA1_c14020 0.43 -0.6
1,452,221 - PGA1_c14020 0.44 -0.9
1,452,221 - PGA1_c14020 0.44 -0.1
1,452,221 - PGA1_c14020 0.44 -0.8
1,452,221 - PGA1_c14020 0.44 -0.3
1,452,221 - PGA1_c14020 0.44 -0.3
1,452,221 - PGA1_c14020 0.44 -0.9
1,452,221 - PGA1_c14020 0.44 -0.4
1,452,221 - PGA1_c14020 0.44 +0.2
1,452,258 + PGA1_c14020 0.50 -2.1
1,452,266 - PGA1_c14020 0.51 -1.0
1,452,293 + PGA1_c14020 0.56 -1.4
1,452,307 + PGA1_c14020 0.58 -0.4
1,452,315 - PGA1_c14020 0.59 -0.4
1,452,315 - PGA1_c14020 0.59 -0.6
1,452,315 - PGA1_c14020 0.59 -2.1
1,452,315 - PGA1_c14020 0.59 -0.1
1,452,315 - PGA1_c14020 0.59 -1.3
1,452,320 - PGA1_c14020 0.60 -1.2
1,452,379 - PGA1_c14020 0.70 -1.6
1,452,405 - PGA1_c14020 0.74 -0.4
1,452,435 + PGA1_c14020 0.79 -0.6
1,452,515 - -0.6
1,452,515 - +0.6
1,452,574 + +0.9
1,452,607 + +0.6
1,452,617 + -1.7
1,452,617 + -0.7
1,452,617 + -0.1
1,452,617 + -0.5
1,452,617 + -0.6
1,452,617 + +0.2
1,452,622 + -1.3
1,452,624 + -0.2
1,452,624 + -0.2
1,452,744 + PGA1_c14030 0.27 +0.5
1,452,836 + PGA1_c14030 0.41 -0.0
1,452,972 - PGA1_c14030 0.63 -0.8
1,453,061 - PGA1_c14030 0.77 -1.2
1,453,104 - PGA1_c14030 0.84 +0.3
1,453,163 - -1.2
1,453,175 + -0.5
1,453,357 + +0.6
1,453,357 + -0.5
1,453,357 + -0.1
1,453,391 + -0.8
1,453,493 + -0.9
1,453,565 + +0.2

Or see this region's nucleotide sequence