Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c11620

Experiment: m.b. Thallium(I) acetate 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c11600 and PGA1_c11610 overlap by 4 nucleotidesPGA1_c11610 and PGA1_c11620 are separated by 43 nucleotidesPGA1_c11620 and PGA1_c11630 are separated by 265 nucleotides PGA1_c11600: PGA1_c11600 - Uncharacterized protein conserved in bacteria, at 1,199,250 to 1,199,690 _c11600 PGA1_c11610: PGA1_c11610 - Uncharacterized protein conserved in bacteria, at 1,199,687 to 1,200,238 _c11610 PGA1_c11620: PGA1_c11620 - Uncharacterized conserved protein, at 1,200,282 to 1,200,575 _c11620 PGA1_c11630: PGA1_c11630 - valyl-tRNA synthetase ValS, at 1,200,841 to 1,203,915 _c11630 Position (kb) 1200 1201Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1199.454 kb on + strand, within PGA1_c11600at 1199.582 kb on - strand, within PGA1_c11600at 1199.658 kb on + strandat 1199.713 kb on + strandat 1199.713 kb on + strandat 1199.713 kb on + strandat 1199.721 kb on - strandat 1199.782 kb on + strand, within PGA1_c11610at 1199.827 kb on - strand, within PGA1_c11610at 1199.841 kb on + strand, within PGA1_c11610at 1199.841 kb on + strand, within PGA1_c11610at 1199.841 kb on + strand, within PGA1_c11610at 1199.849 kb on - strand, within PGA1_c11610at 1199.860 kb on - strand, within PGA1_c11610at 1199.890 kb on + strand, within PGA1_c11610at 1200.036 kb on + strand, within PGA1_c11610at 1200.036 kb on + strand, within PGA1_c11610at 1200.044 kb on - strand, within PGA1_c11610at 1200.100 kb on + strand, within PGA1_c11610at 1200.112 kb on - strand, within PGA1_c11610at 1200.235 kb on + strandat 1200.245 kb on + strandat 1200.245 kb on + strandat 1200.245 kb on + strandat 1200.245 kb on + strandat 1200.248 kb on - strandat 1200.253 kb on - strandat 1200.253 kb on - strandat 1200.253 kb on - strandat 1200.275 kb on - strandat 1200.281 kb on - strandat 1200.281 kb on - strandat 1200.327 kb on - strand, within PGA1_c11620at 1200.340 kb on + strand, within PGA1_c11620at 1200.340 kb on + strand, within PGA1_c11620at 1200.348 kb on - strand, within PGA1_c11620at 1200.348 kb on - strand, within PGA1_c11620at 1200.434 kb on - strand, within PGA1_c11620at 1200.446 kb on + strand, within PGA1_c11620at 1200.504 kb on + strand, within PGA1_c11620at 1200.511 kb on + strand, within PGA1_c11620at 1200.549 kb on - strandat 1200.550 kb on - strandat 1200.583 kb on + strandat 1200.616 kb on + strandat 1200.616 kb on + strandat 1200.616 kb on + strandat 1200.616 kb on + strandat 1200.616 kb on + strandat 1200.616 kb on + strandat 1200.621 kb on + strandat 1200.624 kb on - strandat 1200.624 kb on - strandat 1200.624 kb on - strandat 1200.624 kb on - strandat 1200.640 kb on - strandat 1200.712 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.002 mg/ml
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1,199,454 + PGA1_c11600 0.46 +1.9
1,199,582 - PGA1_c11600 0.75 -0.1
1,199,658 + +0.3
1,199,713 + +0.3
1,199,713 + -0.0
1,199,713 + +0.8
1,199,721 - +0.6
1,199,782 + PGA1_c11610 0.17 -0.7
1,199,827 - PGA1_c11610 0.25 +1.2
1,199,841 + PGA1_c11610 0.28 +0.6
1,199,841 + PGA1_c11610 0.28 -1.2
1,199,841 + PGA1_c11610 0.28 +1.5
1,199,849 - PGA1_c11610 0.29 -0.6
1,199,860 - PGA1_c11610 0.31 -1.6
1,199,890 + PGA1_c11610 0.37 -0.3
1,200,036 + PGA1_c11610 0.63 +0.1
1,200,036 + PGA1_c11610 0.63 +0.6
1,200,044 - PGA1_c11610 0.65 -0.6
1,200,100 + PGA1_c11610 0.75 +0.3
1,200,112 - PGA1_c11610 0.77 +1.4
1,200,235 + +0.3
1,200,245 + -2.9
1,200,245 + +0.0
1,200,245 + +0.4
1,200,245 + +1.4
1,200,248 - -0.2
1,200,253 - +0.5
1,200,253 - -0.3
1,200,253 - +0.6
1,200,275 - -0.2
1,200,281 - +0.1
1,200,281 - -0.2
1,200,327 - PGA1_c11620 0.15 -0.2
1,200,340 + PGA1_c11620 0.20 +0.0
1,200,340 + PGA1_c11620 0.20 +1.3
1,200,348 - PGA1_c11620 0.22 +0.1
1,200,348 - PGA1_c11620 0.22 +1.5
1,200,434 - PGA1_c11620 0.52 +0.9
1,200,446 + PGA1_c11620 0.56 +0.1
1,200,504 + PGA1_c11620 0.76 +0.3
1,200,511 + PGA1_c11620 0.78 +0.3
1,200,549 - -1.4
1,200,550 - -0.8
1,200,583 + -2.6
1,200,616 + -0.2
1,200,616 + -0.2
1,200,616 + -0.4
1,200,616 + +1.6
1,200,616 + +1.0
1,200,616 + +0.0
1,200,621 + +2.4
1,200,624 - -0.8
1,200,624 - +0.3
1,200,624 - +1.4
1,200,624 - -2.4
1,200,640 - -1.7
1,200,712 - -1.0

Or see this region's nucleotide sequence