Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c10690

Experiment: m.b. Thallium(I) acetate 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c10670 and PGA1_c10680 are separated by 9 nucleotidesPGA1_c10680 and PGA1_c10690 are separated by 76 nucleotidesPGA1_c10690 and PGA1_c10700 are separated by 222 nucleotidesPGA1_c10700 and PGA1_c10710 are separated by 6 nucleotidesPGA1_c10710 and PGA1_c10720 overlap by 4 nucleotides PGA1_c10670: PGA1_c10670 - putative putrescine transport ATP-binding protein, at 1,105,267 to 1,106,394 _c10670 PGA1_c10680: PGA1_c10680 - helix-turn-helix domain-containing protein, at 1,106,404 to 1,107,093 _c10680 PGA1_c10690: PGA1_c10690 - hypothetical protein, at 1,107,170 to 1,107,478 _c10690 PGA1_c10700: PGA1_c10700 - putative independent protein translocase protein TatA, at 1,107,701 to 1,107,919 _c10700 PGA1_c10710: PGA1_c10710 - putative sec-independent protein translocase protein TatB, at 1,107,926 to 1,108,411 _c10710 PGA1_c10720: PGA1_c10720 - putative sec-independent protein translocase protein TatC, at 1,108,408 to 1,109,376 _c10720 Position (kb) 1107 1108Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1106.204 kb on + strand, within PGA1_c10670at 1106.223 kb on + strand, within PGA1_c10670at 1106.345 kb on + strandat 1106.443 kb on - strandat 1106.556 kb on - strand, within PGA1_c10680at 1106.558 kb on + strand, within PGA1_c10680at 1106.566 kb on - strand, within PGA1_c10680at 1106.566 kb on - strand, within PGA1_c10680at 1106.566 kb on - strand, within PGA1_c10680at 1106.676 kb on + strand, within PGA1_c10680at 1106.716 kb on + strand, within PGA1_c10680at 1106.716 kb on + strand, within PGA1_c10680at 1106.786 kb on + strand, within PGA1_c10680at 1106.916 kb on + strand, within PGA1_c10680at 1106.924 kb on - strand, within PGA1_c10680at 1106.924 kb on - strand, within PGA1_c10680at 1106.947 kb on - strand, within PGA1_c10680at 1107.062 kb on - strandat 1107.083 kb on + strandat 1107.095 kb on + strandat 1107.096 kb on - strandat 1107.100 kb on + strandat 1107.100 kb on + strandat 1107.103 kb on - strandat 1107.115 kb on + strandat 1107.123 kb on + strandat 1107.131 kb on - strandat 1107.131 kb on - strandat 1107.162 kb on + strandat 1107.247 kb on - strand, within PGA1_c10690at 1107.302 kb on + strand, within PGA1_c10690at 1107.423 kb on + strand, within PGA1_c10690at 1107.442 kb on + strand, within PGA1_c10690at 1107.442 kb on + strand, within PGA1_c10690at 1107.449 kb on + strandat 1107.450 kb on + strandat 1107.450 kb on + strandat 1107.450 kb on - strandat 1107.498 kb on + strandat 1107.612 kb on - strandat 1107.612 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.002 mg/ml
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1,106,204 + PGA1_c10670 0.83 +0.3
1,106,223 + PGA1_c10670 0.85 +0.8
1,106,345 + +0.6
1,106,443 - +1.3
1,106,556 - PGA1_c10680 0.22 -1.8
1,106,558 + PGA1_c10680 0.22 +1.6
1,106,566 - PGA1_c10680 0.23 +0.5
1,106,566 - PGA1_c10680 0.23 +0.3
1,106,566 - PGA1_c10680 0.23 -0.6
1,106,676 + PGA1_c10680 0.39 -0.2
1,106,716 + PGA1_c10680 0.45 +3.6
1,106,716 + PGA1_c10680 0.45 +0.5
1,106,786 + PGA1_c10680 0.55 -0.5
1,106,916 + PGA1_c10680 0.74 +1.5
1,106,924 - PGA1_c10680 0.75 +0.2
1,106,924 - PGA1_c10680 0.75 +0.8
1,106,947 - PGA1_c10680 0.79 +0.2
1,107,062 - +0.8
1,107,083 + -0.4
1,107,095 + +0.6
1,107,096 - +0.6
1,107,100 + -1.2
1,107,100 + +1.7
1,107,103 - +0.7
1,107,115 + -0.2
1,107,123 + +0.8
1,107,131 - +0.6
1,107,131 - +1.6
1,107,162 + +0.1
1,107,247 - PGA1_c10690 0.25 +1.0
1,107,302 + PGA1_c10690 0.43 -0.3
1,107,423 + PGA1_c10690 0.82 -1.7
1,107,442 + PGA1_c10690 0.88 +0.6
1,107,442 + PGA1_c10690 0.88 +0.6
1,107,449 + -0.6
1,107,450 + -0.3
1,107,450 + -1.5
1,107,450 - +0.3
1,107,498 + -0.4
1,107,612 - +1.0
1,107,612 - -1.2

Or see this region's nucleotide sequence