Experiment: m.b. Thallium(I) acetate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c00090 and PGA1_c00100 are separated by 11 nucleotides
PGA1_c00090: PGA1_c00090 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 9,965 to 11,044
_c00090
PGA1_c00100: PGA1_c00100 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 11,056 to 12,081
_c00100
Position (kb)
11
12
13 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 10.079 kb on - strand, within PGA1_c00090 at 10.114 kb on + strand, within PGA1_c00090 at 10.127 kb on - strand, within PGA1_c00090 at 10.179 kb on + strand, within PGA1_c00090 at 10.184 kb on + strand, within PGA1_c00090 at 10.187 kb on - strand, within PGA1_c00090 at 10.189 kb on + strand, within PGA1_c00090 at 10.281 kb on - strand, within PGA1_c00090 at 10.293 kb on - strand, within PGA1_c00090 at 10.293 kb on - strand, within PGA1_c00090 at 10.336 kb on - strand, within PGA1_c00090 at 10.343 kb on + strand, within PGA1_c00090 at 10.351 kb on - strand, within PGA1_c00090 at 10.351 kb on - strand, within PGA1_c00090 at 10.359 kb on - strand, within PGA1_c00090 at 10.421 kb on + strand, within PGA1_c00090 at 10.433 kb on + strand, within PGA1_c00090 at 10.434 kb on - strand, within PGA1_c00090 at 10.443 kb on + strand, within PGA1_c00090 at 10.445 kb on + strand, within PGA1_c00090 at 10.614 kb on + strand, within PGA1_c00090 at 10.622 kb on + strand, within PGA1_c00090 at 10.622 kb on - strand, within PGA1_c00090 at 10.622 kb on - strand, within PGA1_c00090 at 10.703 kb on + strand, within PGA1_c00090 at 10.703 kb on + strand, within PGA1_c00090 at 10.704 kb on + strand, within PGA1_c00090 at 10.719 kb on + strand, within PGA1_c00090 at 10.740 kb on + strand, within PGA1_c00090 at 10.740 kb on + strand, within PGA1_c00090 at 10.740 kb on + strand, within PGA1_c00090 at 10.740 kb on + strand, within PGA1_c00090 at 10.748 kb on - strand, within PGA1_c00090 at 10.798 kb on - strand, within PGA1_c00090 at 10.863 kb on + strand, within PGA1_c00090 at 10.864 kb on + strand, within PGA1_c00090 at 10.864 kb on + strand, within PGA1_c00090 at 10.879 kb on - strand, within PGA1_c00090 at 10.923 kb on - strand, within PGA1_c00090 at 10.954 kb on + strand at 10.959 kb on + strand at 10.967 kb on - strand at 10.972 kb on - strand at 11.007 kb on - strand at 11.021 kb on + strand at 11.026 kb on + strand at 11.029 kb on - strand at 11.029 kb on - strand at 11.105 kb on + strand at 11.170 kb on + strand, within PGA1_c00100 at 11.242 kb on + strand, within PGA1_c00100 at 11.250 kb on - strand, within PGA1_c00100 at 11.258 kb on + strand, within PGA1_c00100 at 11.291 kb on + strand, within PGA1_c00100 at 11.296 kb on + strand, within PGA1_c00100 at 11.304 kb on - strand, within PGA1_c00100 at 11.306 kb on - strand, within PGA1_c00100 at 11.328 kb on + strand, within PGA1_c00100 at 11.391 kb on + strand, within PGA1_c00100 at 11.399 kb on - strand, within PGA1_c00100 at 11.399 kb on - strand, within PGA1_c00100 at 11.402 kb on + strand, within PGA1_c00100 at 11.409 kb on - strand, within PGA1_c00100 at 11.409 kb on - strand, within PGA1_c00100 at 11.415 kb on - strand, within PGA1_c00100 at 11.424 kb on + strand, within PGA1_c00100 at 11.424 kb on + strand, within PGA1_c00100 at 11.424 kb on + strand, within PGA1_c00100 at 11.432 kb on - strand, within PGA1_c00100 at 11.432 kb on - strand, within PGA1_c00100 at 11.455 kb on + strand, within PGA1_c00100 at 11.455 kb on + strand, within PGA1_c00100 at 11.463 kb on - strand, within PGA1_c00100 at 11.463 kb on - strand, within PGA1_c00100 at 11.463 kb on - strand, within PGA1_c00100 at 11.474 kb on + strand, within PGA1_c00100 at 11.474 kb on + strand, within PGA1_c00100 at 11.474 kb on + strand, within PGA1_c00100 at 11.482 kb on - strand, within PGA1_c00100 at 11.544 kb on - strand, within PGA1_c00100 at 11.578 kb on + strand, within PGA1_c00100 at 11.578 kb on + strand, within PGA1_c00100 at 11.578 kb on + strand, within PGA1_c00100 at 11.578 kb on + strand, within PGA1_c00100 at 11.578 kb on + strand, within PGA1_c00100 at 11.578 kb on + strand, within PGA1_c00100 at 11.586 kb on - strand, within PGA1_c00100 at 11.586 kb on - strand, within PGA1_c00100 at 11.586 kb on - strand, within PGA1_c00100 at 11.586 kb on - strand, within PGA1_c00100 at 11.650 kb on + strand, within PGA1_c00100 at 11.678 kb on + strand, within PGA1_c00100 at 11.686 kb on - strand, within PGA1_c00100 at 11.686 kb on - strand, within PGA1_c00100 at 11.688 kb on + strand, within PGA1_c00100 at 11.688 kb on + strand, within PGA1_c00100 at 11.695 kb on + strand, within PGA1_c00100 at 11.695 kb on + strand, within PGA1_c00100 at 11.703 kb on - strand, within PGA1_c00100 at 11.705 kb on + strand, within PGA1_c00100 at 11.707 kb on + strand, within PGA1_c00100 at 11.715 kb on + strand, within PGA1_c00100 at 11.715 kb on + strand, within PGA1_c00100 at 11.715 kb on + strand, within PGA1_c00100 at 11.715 kb on + strand, within PGA1_c00100 at 11.715 kb on - strand, within PGA1_c00100 at 11.731 kb on - strand, within PGA1_c00100 at 11.743 kb on + strand, within PGA1_c00100 at 11.761 kb on - strand, within PGA1_c00100 at 11.761 kb on - strand, within PGA1_c00100 at 11.774 kb on + strand, within PGA1_c00100 at 11.837 kb on - strand, within PGA1_c00100 at 11.850 kb on - strand, within PGA1_c00100 at 11.892 kb on - strand, within PGA1_c00100 at 11.906 kb on - strand, within PGA1_c00100 at 11.914 kb on - strand, within PGA1_c00100 at 11.932 kb on + strand, within PGA1_c00100 at 11.988 kb on + strand at 11.998 kb on + strand at 11.998 kb on + strand at 11.998 kb on + strand at 11.998 kb on + strand at 12.001 kb on - strand at 12.009 kb on + strand at 12.060 kb on + strand at 12.060 kb on + strand at 12.084 kb on - strand at 12.123 kb on + strand at 12.137 kb on + strand at 12.167 kb on + strand at 12.167 kb on + strand at 12.167 kb on + strand at 12.167 kb on + strand at 12.167 kb on + strand at 12.167 kb on + strand at 12.175 kb on - strand at 12.209 kb on + strand at 12.209 kb on + strand at 12.245 kb on + strand at 12.288 kb on + strand at 12.288 kb on + strand at 12.301 kb on - strand at 12.307 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.002 mg/ml remove 10,079 - PGA1_c00090 0.11 +1.4 10,114 + PGA1_c00090 0.14 +0.6 10,127 - PGA1_c00090 0.15 -0.5 10,179 + PGA1_c00090 0.20 -0.1 10,184 + PGA1_c00090 0.20 +0.0 10,187 - PGA1_c00090 0.21 +0.6 10,189 + PGA1_c00090 0.21 +0.2 10,281 - PGA1_c00090 0.29 +0.8 10,293 - PGA1_c00090 0.30 -0.4 10,293 - PGA1_c00090 0.30 -1.5 10,336 - PGA1_c00090 0.34 -0.8 10,343 + PGA1_c00090 0.35 +0.6 10,351 - PGA1_c00090 0.36 +0.5 10,351 - PGA1_c00090 0.36 +0.4 10,359 - PGA1_c00090 0.36 +0.5 10,421 + PGA1_c00090 0.42 +2.0 10,433 + PGA1_c00090 0.43 -0.6 10,434 - PGA1_c00090 0.43 -0.4 10,443 + PGA1_c00090 0.44 -0.2 10,445 + PGA1_c00090 0.44 +0.3 10,614 + PGA1_c00090 0.60 +1.4 10,622 + PGA1_c00090 0.61 -0.6 10,622 - PGA1_c00090 0.61 +2.6 10,622 - PGA1_c00090 0.61 +0.8 10,703 + PGA1_c00090 0.68 +1.8 10,703 + PGA1_c00090 0.68 -0.1 10,704 + PGA1_c00090 0.68 -0.1 10,719 + PGA1_c00090 0.70 +0.2 10,740 + PGA1_c00090 0.72 +0.3 10,740 + PGA1_c00090 0.72 -0.6 10,740 + PGA1_c00090 0.72 +1.0 10,740 + PGA1_c00090 0.72 -0.1 10,748 - PGA1_c00090 0.72 -0.2 10,798 - PGA1_c00090 0.77 -0.2 10,863 + PGA1_c00090 0.83 +0.8 10,864 + PGA1_c00090 0.83 +0.0 10,864 + PGA1_c00090 0.83 +0.3 10,879 - PGA1_c00090 0.85 +0.4 10,923 - PGA1_c00090 0.89 -0.1 10,954 + -1.5 10,959 + -0.1 10,967 - -0.2 10,972 - +0.0 11,007 - +0.4 11,021 + -0.1 11,026 + +0.3 11,029 - +1.1 11,029 - -0.1 11,105 + -0.4 11,170 + PGA1_c00100 0.11 +1.8 11,242 + PGA1_c00100 0.18 +0.8 11,250 - PGA1_c00100 0.19 -0.2 11,258 + PGA1_c00100 0.20 -0.1 11,291 + PGA1_c00100 0.23 +0.2 11,296 + PGA1_c00100 0.23 +0.0 11,304 - PGA1_c00100 0.24 -1.4 11,306 - PGA1_c00100 0.24 -0.6 11,328 + PGA1_c00100 0.27 +0.5 11,391 + PGA1_c00100 0.33 +0.8 11,399 - PGA1_c00100 0.33 -0.6 11,399 - PGA1_c00100 0.33 -1.2 11,402 + PGA1_c00100 0.34 +0.8 11,409 - PGA1_c00100 0.34 +0.2 11,409 - PGA1_c00100 0.34 -1.3 11,415 - PGA1_c00100 0.35 -0.6 11,424 + PGA1_c00100 0.36 +1.2 11,424 + PGA1_c00100 0.36 -1.2 11,424 + PGA1_c00100 0.36 -0.8 11,432 - PGA1_c00100 0.37 -0.1 11,432 - PGA1_c00100 0.37 -0.9 11,455 + PGA1_c00100 0.39 -0.5 11,455 + PGA1_c00100 0.39 +0.2 11,463 - PGA1_c00100 0.40 -0.4 11,463 - PGA1_c00100 0.40 +0.2 11,463 - PGA1_c00100 0.40 +0.2 11,474 + PGA1_c00100 0.41 +0.4 11,474 + PGA1_c00100 0.41 +0.6 11,474 + PGA1_c00100 0.41 -0.4 11,482 - PGA1_c00100 0.42 +0.2 11,544 - PGA1_c00100 0.48 +0.6 11,578 + PGA1_c00100 0.51 +0.4 11,578 + PGA1_c00100 0.51 -0.3 11,578 + PGA1_c00100 0.51 -0.3 11,578 + PGA1_c00100 0.51 +1.3 11,578 + PGA1_c00100 0.51 -1.1 11,578 + PGA1_c00100 0.51 +0.5 11,586 - PGA1_c00100 0.52 +0.6 11,586 - PGA1_c00100 0.52 -0.1 11,586 - PGA1_c00100 0.52 -0.6 11,586 - PGA1_c00100 0.52 -1.2 11,650 + PGA1_c00100 0.58 +0.4 11,678 + PGA1_c00100 0.61 -0.4 11,686 - PGA1_c00100 0.61 +0.1 11,686 - PGA1_c00100 0.61 +0.3 11,688 + PGA1_c00100 0.62 +0.4 11,688 + PGA1_c00100 0.62 -0.1 11,695 + PGA1_c00100 0.62 -1.2 11,695 + PGA1_c00100 0.62 +0.3 11,703 - PGA1_c00100 0.63 +0.3 11,705 + PGA1_c00100 0.63 -0.1 11,707 + PGA1_c00100 0.63 -0.5 11,715 + PGA1_c00100 0.64 -0.4 11,715 + PGA1_c00100 0.64 +0.3 11,715 + PGA1_c00100 0.64 -0.6 11,715 + PGA1_c00100 0.64 +0.2 11,715 - PGA1_c00100 0.64 -1.8 11,731 - PGA1_c00100 0.66 -1.6 11,743 + PGA1_c00100 0.67 -0.2 11,761 - PGA1_c00100 0.69 -1.0 11,761 - PGA1_c00100 0.69 -1.3 11,774 + PGA1_c00100 0.70 -0.2 11,837 - PGA1_c00100 0.76 +1.8 11,850 - PGA1_c00100 0.77 +0.5 11,892 - PGA1_c00100 0.81 +0.6 11,906 - PGA1_c00100 0.83 +0.5 11,914 - PGA1_c00100 0.84 -0.6 11,932 + PGA1_c00100 0.85 -0.3 11,988 + -0.8 11,998 + +0.3 11,998 + +0.5 11,998 + +0.6 11,998 + -0.1 12,001 - -0.4 12,009 + +0.2 12,060 + -0.2 12,060 + -0.2 12,084 - -0.2 12,123 + -0.8 12,137 + -2.1 12,167 + +0.5 12,167 + +0.1 12,167 + -1.6 12,167 + -0.2 12,167 + +1.0 12,167 + +0.5 12,175 - -0.6 12,209 + -0.2 12,209 + -1.4 12,245 + -1.2 12,288 + +0.4 12,288 + +0.5 12,301 - +1.0 12,307 + -0.9
Or see this region's nucleotide sequence