Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2820 and Dshi_2821 are separated by 221 nucleotides Dshi_2821 and Dshi_2822 are separated by 23 nucleotides Dshi_2822 and Dshi_2823 are separated by 10 nucleotides
Dshi_2820: Dshi_2820 - response regulator receiver modulated diguanylate cyclase (RefSeq), at 2,976,378 to 2,977,766
_2820
Dshi_2821: Dshi_2821 - protein of unknown function DUF983 (RefSeq), at 2,977,988 to 2,978,386
_2821
Dshi_2822: Dshi_2822 - NUDIX hydrolase (RefSeq), at 2,978,410 to 2,979,087
_2822
Dshi_2823: Dshi_2823 - aldo/keto reductase (RefSeq), at 2,979,098 to 2,980,144
_2823
Position (kb)
2977
2978
2979 Strain fitness (log2 ratio)
-1
0
1 at 2977.028 kb on - strand, within Dshi_2820 at 2977.067 kb on + strand, within Dshi_2820 at 2977.079 kb on + strand, within Dshi_2820 at 2977.187 kb on + strand, within Dshi_2820 at 2977.392 kb on + strand, within Dshi_2820 at 2977.424 kb on + strand, within Dshi_2820 at 2977.435 kb on + strand, within Dshi_2820 at 2977.531 kb on + strand, within Dshi_2820 at 2977.597 kb on - strand, within Dshi_2820 at 2977.840 kb on + strand at 2977.840 kb on + strand at 2977.851 kb on + strand at 2977.851 kb on + strand at 2977.859 kb on - strand at 2977.861 kb on + strand at 2977.961 kb on - strand at 2978.004 kb on + strand at 2978.023 kb on - strand at 2978.102 kb on - strand, within Dshi_2821 at 2978.501 kb on + strand, within Dshi_2822 at 2978.555 kb on + strand, within Dshi_2822 at 2978.563 kb on - strand, within Dshi_2822 at 2979.129 kb on + strand at 2979.190 kb on - strand at 2979.264 kb on + strand, within Dshi_2823 at 2979.289 kb on - strand, within Dshi_2823 at 2979.290 kb on - strand, within Dshi_2823 at 2979.329 kb on - strand, within Dshi_2823 at 2979.334 kb on - strand, within Dshi_2823
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 2,977,028 - Dshi_2820 0.47 +0.1 2,977,067 + Dshi_2820 0.50 -0.0 2,977,079 + Dshi_2820 0.50 -0.5 2,977,187 + Dshi_2820 0.58 -0.5 2,977,392 + Dshi_2820 0.73 -1.7 2,977,424 + Dshi_2820 0.75 +0.1 2,977,435 + Dshi_2820 0.76 +0.1 2,977,531 + Dshi_2820 0.83 +1.0 2,977,597 - Dshi_2820 0.88 -1.2 2,977,840 + -0.8 2,977,840 + -0.1 2,977,851 + +0.1 2,977,851 + -0.2 2,977,859 - +0.6 2,977,861 + +0.2 2,977,961 - +0.5 2,978,004 + -0.0 2,978,023 - +0.1 2,978,102 - Dshi_2821 0.29 +0.7 2,978,501 + Dshi_2822 0.13 +0.9 2,978,555 + Dshi_2822 0.21 -0.5 2,978,563 - Dshi_2822 0.23 -0.3 2,979,129 + +0.3 2,979,190 - -0.1 2,979,264 + Dshi_2823 0.16 -0.3 2,979,289 - Dshi_2823 0.18 -0.7 2,979,290 - Dshi_2823 0.18 +0.1 2,979,329 - Dshi_2823 0.22 +0.8 2,979,334 - Dshi_2823 0.23 -0.7
Or see this region's nucleotide sequence