Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2742

Experiment: m.b. A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2740 and Dshi_2741 are separated by 42 nucleotidesDshi_2741 and Dshi_2742 are separated by 24 nucleotidesDshi_2742 and Dshi_2743 are separated by 200 nucleotidesDshi_2743 and Dshi_2744 are separated by 191 nucleotides Dshi_2740: Dshi_2740 - putative CheA signal transduction histidine kinase (RefSeq), at 2,901,566 to 2,903,512 _2740 Dshi_2741: Dshi_2741 - hypothetical protein (RefSeq), at 2,903,555 to 2,903,791 _2741 Dshi_2742: Dshi_2742 - Adenylosuccinate synthase (RefSeq), at 2,903,816 to 2,905,111 _2742 Dshi_2743: Dshi_2743 - preprotein translocase, SecG subunit (RefSeq), at 2,905,312 to 2,905,680 _2743 Dshi_2744: Dshi_2744 - CTP synthase (RefSeq), at 2,905,872 to 2,907,515 _2744 Position (kb) 2903 2904 2905 2906Strain fitness (log2 ratio) -3 -2 -1 0 1at 2902.963 kb on + strand, within Dshi_2740at 2903.317 kb on - strand, within Dshi_2740at 2903.319 kb on - strandat 2903.403 kb on + strandat 2903.460 kb on + strandat 2903.514 kb on - strandat 2903.592 kb on + strand, within Dshi_2741at 2903.592 kb on + strand, within Dshi_2741at 2903.592 kb on + strand, within Dshi_2741at 2903.600 kb on - strand, within Dshi_2741at 2903.752 kb on + strand, within Dshi_2741at 2905.235 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml
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2,902,963 + Dshi_2740 0.72 -3.1
2,903,317 - Dshi_2740 0.90 -1.2
2,903,319 - +0.4
2,903,403 + -0.5
2,903,460 + -0.6
2,903,514 - +0.1
2,903,592 + Dshi_2741 0.16 -0.4
2,903,592 + Dshi_2741 0.16 +0.4
2,903,592 + Dshi_2741 0.16 +0.3
2,903,600 - Dshi_2741 0.19 +1.0
2,903,752 + Dshi_2741 0.83 -0.6
2,905,235 + +0.3

Or see this region's nucleotide sequence