Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2740 and Dshi_2741 are separated by 42 nucleotides Dshi_2741 and Dshi_2742 are separated by 24 nucleotides Dshi_2742 and Dshi_2743 are separated by 200 nucleotides Dshi_2743 and Dshi_2744 are separated by 191 nucleotides
Dshi_2740: Dshi_2740 - putative CheA signal transduction histidine kinase (RefSeq), at 2,901,566 to 2,903,512
_2740
Dshi_2741: Dshi_2741 - hypothetical protein (RefSeq), at 2,903,555 to 2,903,791
_2741
Dshi_2742: Dshi_2742 - Adenylosuccinate synthase (RefSeq), at 2,903,816 to 2,905,111
_2742
Dshi_2743: Dshi_2743 - preprotein translocase, SecG subunit (RefSeq), at 2,905,312 to 2,905,680
_2743
Dshi_2744: Dshi_2744 - CTP synthase (RefSeq), at 2,905,872 to 2,907,515
_2744
Position (kb)
2903
2904
2905
2906 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2902.963 kb on + strand, within Dshi_2740 at 2903.317 kb on - strand, within Dshi_2740 at 2903.319 kb on - strand at 2903.403 kb on + strand at 2903.460 kb on + strand at 2903.514 kb on - strand at 2903.592 kb on + strand, within Dshi_2741 at 2903.592 kb on + strand, within Dshi_2741 at 2903.592 kb on + strand, within Dshi_2741 at 2903.600 kb on - strand, within Dshi_2741 at 2903.752 kb on + strand, within Dshi_2741 at 2905.235 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 2,902,963 + Dshi_2740 0.72 -3.1 2,903,317 - Dshi_2740 0.90 -1.2 2,903,319 - +0.4 2,903,403 + -0.5 2,903,460 + -0.6 2,903,514 - +0.1 2,903,592 + Dshi_2741 0.16 -0.4 2,903,592 + Dshi_2741 0.16 +0.4 2,903,592 + Dshi_2741 0.16 +0.3 2,903,600 - Dshi_2741 0.19 +1.0 2,903,752 + Dshi_2741 0.83 -0.6 2,905,235 + +0.3
Or see this region's nucleotide sequence