Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2721 and Dshi_2722 are separated by 84 nucleotides Dshi_2722 and Dshi_2723 are separated by 213 nucleotides Dshi_2723 and Dshi_2724 overlap by 4 nucleotides Dshi_2724 and Dshi_2725 are separated by 23 nucleotides
Dshi_2721: Dshi_2721 - peptidase M24 (RefSeq), at 2,882,651 to 2,884,507
_2721
Dshi_2722: Dshi_2722 - protein of unknown function DUF427 (RefSeq), at 2,884,592 to 2,884,933
_2722
Dshi_2723: Dshi_2723 - Intracellular septation protein A (RefSeq), at 2,885,147 to 2,885,776
_2723
Dshi_2724: Dshi_2724 - protein of unknown function DUF6 transmembrane (RefSeq), at 2,885,773 to 2,886,675
_2724
Dshi_2725: Dshi_2725 - signal recognition particle-docking protein FtsY (RefSeq), at 2,886,699 to 2,888,198
_2725
Position (kb)
2885
2886 Strain fitness (log2 ratio)
-1
0
1 at 2884.203 kb on - strand, within Dshi_2721 at 2884.345 kb on + strand at 2884.549 kb on + strand at 2884.635 kb on - strand, within Dshi_2722 at 2884.650 kb on + strand, within Dshi_2722 at 2884.687 kb on + strand, within Dshi_2722 at 2884.754 kb on - strand, within Dshi_2722 at 2884.778 kb on - strand, within Dshi_2722 at 2885.017 kb on - strand at 2885.818 kb on + strand at 2885.826 kb on - strand at 2886.005 kb on - strand, within Dshi_2724 at 2886.081 kb on - strand, within Dshi_2724 at 2886.171 kb on - strand, within Dshi_2724 at 2886.213 kb on - strand, within Dshi_2724 at 2886.283 kb on - strand, within Dshi_2724 at 2886.340 kb on - strand, within Dshi_2724 at 2886.373 kb on - strand, within Dshi_2724 at 2886.397 kb on + strand, within Dshi_2724 at 2886.476 kb on - strand, within Dshi_2724 at 2886.517 kb on - strand, within Dshi_2724 at 2886.687 kb on + strand at 2886.715 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 2,884,203 - Dshi_2721 0.84 -1.1 2,884,345 + -1.0 2,884,549 + +0.3 2,884,635 - Dshi_2722 0.13 -0.2 2,884,650 + Dshi_2722 0.17 +0.1 2,884,687 + Dshi_2722 0.28 -0.2 2,884,754 - Dshi_2722 0.47 -0.5 2,884,778 - Dshi_2722 0.54 -1.1 2,885,017 - +0.9 2,885,818 + -0.6 2,885,826 - -0.1 2,886,005 - Dshi_2724 0.26 +0.1 2,886,081 - Dshi_2724 0.34 +1.1 2,886,171 - Dshi_2724 0.44 -1.5 2,886,213 - Dshi_2724 0.49 -0.8 2,886,283 - Dshi_2724 0.56 -0.7 2,886,340 - Dshi_2724 0.63 -0.5 2,886,373 - Dshi_2724 0.66 +0.3 2,886,397 + Dshi_2724 0.69 +0.1 2,886,476 - Dshi_2724 0.78 +0.1 2,886,517 - Dshi_2724 0.82 +0.3 2,886,687 + -0.2 2,886,715 - +0.0
Or see this region's nucleotide sequence