Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1594 and Dshi_1595 are separated by 81 nucleotides Dshi_1595 and Dshi_1596 overlap by 8 nucleotides Dshi_1596 and Dshi_1597 are separated by 14 nucleotides
Dshi_1594: Dshi_1594 - alpha/beta hydrolase fold (RefSeq), at 1,660,318 to 1,661,280
_1594
Dshi_1595: Dshi_1595 - protein of unknown function DUF344 (RefSeq), at 1,661,362 to 1,662,231
_1595
Dshi_1596: Dshi_1596 - transcriptional regulator, TetR family (RefSeq), at 1,662,224 to 1,662,841
_1596
Dshi_1597: Dshi_1597 - ABC transporter related (RefSeq), at 1,662,856 to 1,663,923
_1597
Position (kb)
1661
1662
1663 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1660.446 kb on + strand, within Dshi_1594 at 1660.606 kb on + strand, within Dshi_1594 at 1660.741 kb on + strand, within Dshi_1594 at 1660.831 kb on + strand, within Dshi_1594 at 1660.935 kb on + strand, within Dshi_1594 at 1661.002 kb on + strand, within Dshi_1594 at 1661.002 kb on + strand, within Dshi_1594 at 1661.010 kb on - strand, within Dshi_1594 at 1661.031 kb on - strand, within Dshi_1594 at 1661.195 kb on - strand at 1661.324 kb on + strand at 1661.333 kb on + strand at 1661.341 kb on + strand at 1661.349 kb on - strand at 1661.516 kb on + strand, within Dshi_1595 at 1661.556 kb on - strand, within Dshi_1595 at 1661.628 kb on + strand, within Dshi_1595 at 1661.628 kb on + strand, within Dshi_1595 at 1661.656 kb on - strand, within Dshi_1595 at 1661.690 kb on - strand, within Dshi_1595 at 1661.896 kb on - strand, within Dshi_1595 at 1662.146 kb on - strand at 1662.172 kb on - strand at 1662.206 kb on - strand at 1662.312 kb on + strand, within Dshi_1596 at 1662.474 kb on - strand, within Dshi_1596 at 1662.474 kb on - strand, within Dshi_1596 at 1662.497 kb on + strand, within Dshi_1596 at 1662.579 kb on + strand, within Dshi_1596 at 1662.625 kb on - strand, within Dshi_1596 at 1662.625 kb on - strand, within Dshi_1596 at 1662.935 kb on + strand at 1663.045 kb on - strand, within Dshi_1597 at 1663.146 kb on - strand, within Dshi_1597
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 1,660,446 + Dshi_1594 0.13 +0.1 1,660,606 + Dshi_1594 0.30 -0.4 1,660,741 + Dshi_1594 0.44 +0.8 1,660,831 + Dshi_1594 0.53 -0.3 1,660,935 + Dshi_1594 0.64 +0.0 1,661,002 + Dshi_1594 0.71 -0.4 1,661,002 + Dshi_1594 0.71 +0.7 1,661,010 - Dshi_1594 0.72 -0.5 1,661,031 - Dshi_1594 0.74 -0.4 1,661,195 - -0.2 1,661,324 + -0.9 1,661,333 + -0.6 1,661,341 + -1.6 1,661,349 - -0.5 1,661,516 + Dshi_1595 0.18 -1.1 1,661,556 - Dshi_1595 0.22 -0.3 1,661,628 + Dshi_1595 0.31 -0.3 1,661,628 + Dshi_1595 0.31 -0.4 1,661,656 - Dshi_1595 0.34 -1.1 1,661,690 - Dshi_1595 0.38 -0.3 1,661,896 - Dshi_1595 0.61 -0.8 1,662,146 - -1.0 1,662,172 - -1.3 1,662,206 - -0.0 1,662,312 + Dshi_1596 0.14 -0.3 1,662,474 - Dshi_1596 0.40 -0.4 1,662,474 - Dshi_1596 0.40 -0.2 1,662,497 + Dshi_1596 0.44 -1.0 1,662,579 + Dshi_1596 0.57 -2.3 1,662,625 - Dshi_1596 0.65 -0.6 1,662,625 - Dshi_1596 0.65 -1.4 1,662,935 + +2.4 1,663,045 - Dshi_1597 0.18 -0.3 1,663,146 - Dshi_1597 0.27 -0.0
Or see this region's nucleotide sequence