Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0853 and Dshi_0854 are separated by 84 nucleotides Dshi_0854 and Dshi_0855 are separated by 29 nucleotides Dshi_0855 and Dshi_0856 are separated by 9 nucleotides
Dshi_0853: Dshi_0853 - AMP-dependent synthetase and ligase (RefSeq), at 865,066 to 866,964
_0853
Dshi_0854: Dshi_0854 - hypothetical protein (RefSeq), at 867,049 to 867,252
_0854
Dshi_0855: Dshi_0855 - transglutaminase domain protein (RefSeq), at 867,282 to 868,169
_0855
Dshi_0856: Dshi_0856 - protein of unknown function DUF404 (RefSeq), at 868,179 to 870,593
_0856
Position (kb) 867
868 Strain fitness (log2 ratio) -1
0
1 at 866.245 kb on + strand, within Dshi_0853 at 866.245 kb on + strand, within Dshi_0853 at 866.270 kb on - strand, within Dshi_0853 at 866.478 kb on + strand, within Dshi_0853 at 866.691 kb on + strand, within Dshi_0853 at 866.692 kb on + strand, within Dshi_0853 at 866.749 kb on + strand, within Dshi_0853 at 866.762 kb on + strand, within Dshi_0853 at 866.933 kb on + strand at 867.029 kb on - strand at 867.073 kb on + strand, within Dshi_0854 at 867.105 kb on + strand, within Dshi_0854 at 867.209 kb on + strand, within Dshi_0854 at 867.250 kb on - strand at 867.322 kb on + strand at 867.350 kb on - strand at 867.455 kb on + strand, within Dshi_0855 at 867.715 kb on - strand, within Dshi_0855
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 866,245 + Dshi_0853 0.62 +0.9 866,245 + Dshi_0853 0.62 +0.4 866,270 - Dshi_0853 0.63 -0.3 866,478 + Dshi_0853 0.74 -0.1 866,691 + Dshi_0853 0.86 -0.1 866,692 + Dshi_0853 0.86 -0.1 866,749 + Dshi_0853 0.89 -1.2 866,762 + Dshi_0853 0.89 -0.1 866,933 + -0.8 867,029 - +0.7 867,073 + Dshi_0854 0.12 -0.6 867,105 + Dshi_0854 0.27 +0.8 867,209 + Dshi_0854 0.78 +0.4 867,250 - -1.4 867,322 + -1.6 867,350 - -0.3 867,455 + Dshi_0855 0.19 -0.5 867,715 - Dshi_0855 0.49 -0.3
Or see this region's nucleotide sequence