Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0528

Experiment: m.b. A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0527 and Dshi_0528 are separated by 30 nucleotidesDshi_0528 and Dshi_0529 are separated by 13 nucleotides Dshi_0527: Dshi_0527 - Glycerone kinase (RefSeq), at 511,233 to 512,234 _0527 Dshi_0528: Dshi_0528 - Monosaccharide-transporting ATPase (RefSeq), at 512,265 to 513,269 _0528 Dshi_0529: Dshi_0529 - Monosaccharide-transporting ATPase (RefSeq), at 513,283 to 514,284 _0529 Position (kb) 512 513 514Strain fitness (log2 ratio) -2 -1 0 1 2at 511.265 kb on - strandat 511.307 kb on + strandat 511.307 kb on + strandat 511.315 kb on - strandat 511.317 kb on - strandat 511.373 kb on - strand, within Dshi_0527at 511.397 kb on + strand, within Dshi_0527at 511.397 kb on + strand, within Dshi_0527at 511.405 kb on - strand, within Dshi_0527at 511.407 kb on + strand, within Dshi_0527at 511.407 kb on + strand, within Dshi_0527at 511.417 kb on + strand, within Dshi_0527at 511.424 kb on - strand, within Dshi_0527at 511.436 kb on + strand, within Dshi_0527at 511.436 kb on + strand, within Dshi_0527at 511.540 kb on + strand, within Dshi_0527at 511.540 kb on - strand, within Dshi_0527at 511.542 kb on + strand, within Dshi_0527at 511.566 kb on + strand, within Dshi_0527at 511.598 kb on - strand, within Dshi_0527at 511.631 kb on - strand, within Dshi_0527at 511.645 kb on + strand, within Dshi_0527at 511.645 kb on + strand, within Dshi_0527at 511.693 kb on + strand, within Dshi_0527at 511.719 kb on - strand, within Dshi_0527at 511.761 kb on + strand, within Dshi_0527at 511.841 kb on + strand, within Dshi_0527at 511.875 kb on + strand, within Dshi_0527at 511.934 kb on + strand, within Dshi_0527at 512.016 kb on + strand, within Dshi_0527at 512.121 kb on + strand, within Dshi_0527at 512.129 kb on - strand, within Dshi_0527at 512.190 kb on + strandat 512.239 kb on + strandat 512.257 kb on - strandat 512.277 kb on + strandat 512.286 kb on + strandat 512.289 kb on + strandat 512.311 kb on + strandat 512.331 kb on + strandat 512.349 kb on - strandat 512.352 kb on - strandat 512.352 kb on - strandat 512.375 kb on + strand, within Dshi_0528at 512.398 kb on + strand, within Dshi_0528at 512.406 kb on + strand, within Dshi_0528at 512.415 kb on - strand, within Dshi_0528at 512.427 kb on + strand, within Dshi_0528at 512.435 kb on - strand, within Dshi_0528at 512.447 kb on - strand, within Dshi_0528at 512.463 kb on - strand, within Dshi_0528at 512.470 kb on - strand, within Dshi_0528at 512.470 kb on - strand, within Dshi_0528at 512.502 kb on - strand, within Dshi_0528at 512.504 kb on + strand, within Dshi_0528at 512.596 kb on + strand, within Dshi_0528at 512.597 kb on - strand, within Dshi_0528at 512.614 kb on - strand, within Dshi_0528at 512.637 kb on - strand, within Dshi_0528at 512.691 kb on + strand, within Dshi_0528at 512.699 kb on - strand, within Dshi_0528at 512.715 kb on + strand, within Dshi_0528at 512.732 kb on + strand, within Dshi_0528at 512.738 kb on - strand, within Dshi_0528at 512.796 kb on + strand, within Dshi_0528at 512.796 kb on + strand, within Dshi_0528at 512.796 kb on + strand, within Dshi_0528at 512.804 kb on - strand, within Dshi_0528at 512.804 kb on - strand, within Dshi_0528at 512.804 kb on - strand, within Dshi_0528at 512.804 kb on - strand, within Dshi_0528at 512.804 kb on - strand, within Dshi_0528at 512.851 kb on - strand, within Dshi_0528at 512.862 kb on - strand, within Dshi_0528at 512.932 kb on + strand, within Dshi_0528at 512.939 kb on + strand, within Dshi_0528at 512.939 kb on + strand, within Dshi_0528at 512.947 kb on - strand, within Dshi_0528at 512.965 kb on - strandat 513.056 kb on + strand, within Dshi_0528at 513.093 kb on + strand, within Dshi_0528at 513.093 kb on + strand, within Dshi_0528at 513.102 kb on - strand, within Dshi_0528at 513.190 kb on - strandat 513.231 kb on - strandat 513.342 kb on + strandat 513.355 kb on + strandat 513.411 kb on - strand, within Dshi_0529at 513.411 kb on - strand, within Dshi_0529at 513.466 kb on + strand, within Dshi_0529at 513.489 kb on - strand, within Dshi_0529at 513.523 kb on - strand, within Dshi_0529at 513.539 kb on + strand, within Dshi_0529at 513.580 kb on + strand, within Dshi_0529at 513.580 kb on + strand, within Dshi_0529at 513.602 kb on - strand, within Dshi_0529at 513.630 kb on - strand, within Dshi_0529at 513.650 kb on - strand, within Dshi_0529at 513.710 kb on + strand, within Dshi_0529at 513.715 kb on + strand, within Dshi_0529at 513.749 kb on + strand, within Dshi_0529at 513.757 kb on - strand, within Dshi_0529at 513.785 kb on - strand, within Dshi_0529at 513.834 kb on + strand, within Dshi_0529at 513.834 kb on + strand, within Dshi_0529at 513.885 kb on - strand, within Dshi_0529at 513.900 kb on + strand, within Dshi_0529at 513.900 kb on + strand, within Dshi_0529at 513.902 kb on + strand, within Dshi_0529at 513.910 kb on - strand, within Dshi_0529at 513.920 kb on - strand, within Dshi_0529at 513.933 kb on - strand, within Dshi_0529at 513.955 kb on + strand, within Dshi_0529at 513.962 kb on - strand, within Dshi_0529at 513.963 kb on - strand, within Dshi_0529at 513.963 kb on - strand, within Dshi_0529at 513.968 kb on - strand, within Dshi_0529at 513.975 kb on + strand, within Dshi_0529at 513.999 kb on - strand, within Dshi_0529at 514.003 kb on + strand, within Dshi_0529at 514.008 kb on + strand, within Dshi_0529at 514.011 kb on - strand, within Dshi_0529at 514.011 kb on - strand, within Dshi_0529at 514.067 kb on + strand, within Dshi_0529at 514.067 kb on - strand, within Dshi_0529at 514.080 kb on + strand, within Dshi_0529at 514.196 kb on - strandat 514.211 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml
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511,265 - +1.1
511,307 + +0.1
511,307 + -0.2
511,315 - -0.1
511,317 - -0.0
511,373 - Dshi_0527 0.14 +0.4
511,397 + Dshi_0527 0.16 -0.9
511,397 + Dshi_0527 0.16 +0.5
511,405 - Dshi_0527 0.17 -0.6
511,407 + Dshi_0527 0.17 +0.9
511,407 + Dshi_0527 0.17 +0.4
511,417 + Dshi_0527 0.18 -0.9
511,424 - Dshi_0527 0.19 +0.7
511,436 + Dshi_0527 0.20 -0.8
511,436 + Dshi_0527 0.20 -0.2
511,540 + Dshi_0527 0.31 +0.4
511,540 - Dshi_0527 0.31 -1.1
511,542 + Dshi_0527 0.31 +1.1
511,566 + Dshi_0527 0.33 -0.2
511,598 - Dshi_0527 0.36 -0.3
511,631 - Dshi_0527 0.40 +0.4
511,645 + Dshi_0527 0.41 +0.1
511,645 + Dshi_0527 0.41 -0.0
511,693 + Dshi_0527 0.46 -0.7
511,719 - Dshi_0527 0.49 +0.1
511,761 + Dshi_0527 0.53 -0.2
511,841 + Dshi_0527 0.61 +0.6
511,875 + Dshi_0527 0.64 +0.0
511,934 + Dshi_0527 0.70 -2.2
512,016 + Dshi_0527 0.78 -1.0
512,121 + Dshi_0527 0.89 +0.1
512,129 - Dshi_0527 0.89 -0.3
512,190 + +0.4
512,239 + -0.1
512,257 - +0.4
512,277 + +0.6
512,286 + +0.5
512,289 + -1.5
512,311 + -0.7
512,331 + +0.2
512,349 - -0.0
512,352 - -0.0
512,352 - +0.6
512,375 + Dshi_0528 0.11 -0.4
512,398 + Dshi_0528 0.13 +0.1
512,406 + Dshi_0528 0.14 +0.1
512,415 - Dshi_0528 0.15 +0.6
512,427 + Dshi_0528 0.16 +0.5
512,435 - Dshi_0528 0.17 +0.9
512,447 - Dshi_0528 0.18 -0.4
512,463 - Dshi_0528 0.20 -1.4
512,470 - Dshi_0528 0.20 +0.6
512,470 - Dshi_0528 0.20 +0.4
512,502 - Dshi_0528 0.24 +0.1
512,504 + Dshi_0528 0.24 -0.5
512,596 + Dshi_0528 0.33 +1.4
512,597 - Dshi_0528 0.33 -0.2
512,614 - Dshi_0528 0.35 +0.7
512,637 - Dshi_0528 0.37 -0.4
512,691 + Dshi_0528 0.42 -0.6
512,699 - Dshi_0528 0.43 -0.5
512,715 + Dshi_0528 0.45 -0.6
512,732 + Dshi_0528 0.46 -0.4
512,738 - Dshi_0528 0.47 -0.9
512,796 + Dshi_0528 0.53 +0.2
512,796 + Dshi_0528 0.53 -1.0
512,796 + Dshi_0528 0.53 +0.6
512,804 - Dshi_0528 0.54 -0.4
512,804 - Dshi_0528 0.54 -0.4
512,804 - Dshi_0528 0.54 -0.6
512,804 - Dshi_0528 0.54 -1.2
512,804 - Dshi_0528 0.54 +0.1
512,851 - Dshi_0528 0.58 -0.9
512,862 - Dshi_0528 0.59 +0.6
512,932 + Dshi_0528 0.66 -1.0
512,939 + Dshi_0528 0.67 -0.6
512,939 + Dshi_0528 0.67 +0.3
512,947 - Dshi_0528 0.68 +0.9
512,965 - +0.5
513,056 + Dshi_0528 0.79 +0.6
513,093 + Dshi_0528 0.82 -0.3
513,093 + Dshi_0528 0.82 +0.7
513,102 - Dshi_0528 0.83 -0.9
513,190 - +0.7
513,231 - -1.1
513,342 + -0.2
513,355 + +0.9
513,411 - Dshi_0529 0.13 +0.5
513,411 - Dshi_0529 0.13 +0.0
513,466 + Dshi_0529 0.18 -0.5
513,489 - Dshi_0529 0.21 -1.1
513,523 - Dshi_0529 0.24 -0.7
513,539 + Dshi_0529 0.26 +0.6
513,580 + Dshi_0529 0.30 -0.2
513,580 + Dshi_0529 0.30 +0.8
513,602 - Dshi_0529 0.32 -0.0
513,630 - Dshi_0529 0.35 -0.2
513,650 - Dshi_0529 0.37 +0.0
513,710 + Dshi_0529 0.43 +0.3
513,715 + Dshi_0529 0.43 +1.3
513,749 + Dshi_0529 0.47 +0.2
513,757 - Dshi_0529 0.47 +0.0
513,785 - Dshi_0529 0.50 -0.0
513,834 + Dshi_0529 0.55 +1.9
513,834 + Dshi_0529 0.55 +0.0
513,885 - Dshi_0529 0.60 -0.0
513,900 + Dshi_0529 0.62 -1.1
513,900 + Dshi_0529 0.62 +1.1
513,902 + Dshi_0529 0.62 +0.9
513,910 - Dshi_0529 0.63 +1.1
513,920 - Dshi_0529 0.64 -0.1
513,933 - Dshi_0529 0.65 -2.2
513,955 + Dshi_0529 0.67 +0.1
513,962 - Dshi_0529 0.68 +0.9
513,963 - Dshi_0529 0.68 -0.3
513,963 - Dshi_0529 0.68 +0.4
513,968 - Dshi_0529 0.68 +0.0
513,975 + Dshi_0529 0.69 +0.6
513,999 - Dshi_0529 0.71 -0.1
514,003 + Dshi_0529 0.72 +0.5
514,008 + Dshi_0529 0.72 +0.5
514,011 - Dshi_0529 0.73 -0.4
514,011 - Dshi_0529 0.73 +2.1
514,067 + Dshi_0529 0.78 +0.4
514,067 - Dshi_0529 0.78 -0.8
514,080 + Dshi_0529 0.80 -0.5
514,196 - -0.7
514,211 - +0.1

Or see this region's nucleotide sequence