Experiment: BHIS with Nitrofurantoin 0.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0498 and BT0499 are separated by 504 nucleotides BT0499 and BT0500 are separated by 48 nucleotides
BT0498: BT0498 - hypothetical protein (NCBI ptt file), at 616,088 to 616,972
BT0498
BT0499: BT0499 - cation efflux system protein (NCBI ptt file), at 617,477 to 618,376
BT0499
BT0500: BT0500 - putative transport protein (NCBI ptt file), at 618,425 to 620,023
BT0500
Position (kb) 617
618
619 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 616.480 kb on + strand, within BT0498 at 616.483 kb on - strand, within BT0498 at 616.486 kb on + strand, within BT0498 at 616.652 kb on - strand, within BT0498 at 617.082 kb on + strand at 617.087 kb on - strand at 617.327 kb on - strand at 617.455 kb on - strand at 617.479 kb on - strand at 617.533 kb on + strand at 617.543 kb on - strand at 617.555 kb on - strand at 617.555 kb on - strand at 617.568 kb on + strand, within BT0499 at 617.663 kb on - strand, within BT0499 at 617.663 kb on - strand, within BT0499 at 617.688 kb on + strand, within BT0499 at 617.708 kb on - strand, within BT0499 at 617.717 kb on + strand, within BT0499 at 617.720 kb on - strand, within BT0499 at 617.906 kb on - strand, within BT0499 at 617.977 kb on - strand, within BT0499 at 617.993 kb on - strand, within BT0499 at 617.995 kb on + strand, within BT0499 at 617.996 kb on - strand, within BT0499 at 617.996 kb on - strand, within BT0499 at 618.005 kb on - strand, within BT0499 at 618.250 kb on + strand, within BT0499 at 618.252 kb on + strand, within BT0499 at 618.280 kb on + strand, within BT0499 at 618.281 kb on - strand, within BT0499 at 618.320 kb on - strand at 618.352 kb on + strand at 618.438 kb on + strand at 618.578 kb on - strand at 618.697 kb on + strand at 618.704 kb on - strand, within BT0500 at 618.803 kb on - strand, within BT0500 at 619.019 kb on - strand, within BT0500 at 619.082 kb on - strand, within BT0500 at 619.135 kb on - strand, within BT0500 at 619.280 kb on - strand, within BT0500 at 619.331 kb on - strand, within BT0500
Per-strain Table
Position Strand Gene LocusTag Fraction BHIS with Nitrofurantoin 0.15 mM remove 616,480 + BT0498 0.44 +0.9 616,483 - BT0498 0.45 +0.3 616,486 + BT0498 0.45 -0.1 616,652 - BT0498 0.64 -1.1 617,082 + -0.4 617,087 - -0.3 617,327 - -0.4 617,455 - -0.1 617,479 - -1.4 617,533 + +0.3 617,543 - -0.3 617,555 - -0.7 617,555 - -0.7 617,568 + BT0499 0.10 -2.1 617,663 - BT0499 0.21 -1.4 617,663 - BT0499 0.21 -2.1 617,688 + BT0499 0.23 -0.9 617,708 - BT0499 0.26 -0.8 617,717 + BT0499 0.27 -2.9 617,720 - BT0499 0.27 -1.8 617,906 - BT0499 0.48 -0.9 617,977 - BT0499 0.56 -0.1 617,993 - BT0499 0.57 -0.7 617,995 + BT0499 0.58 -0.7 617,996 - BT0499 0.58 -1.1 617,996 - BT0499 0.58 -1.4 618,005 - BT0499 0.59 +0.9 618,250 + BT0499 0.86 -1.1 618,252 + BT0499 0.86 -0.1 618,280 + BT0499 0.89 -0.1 618,281 - BT0499 0.89 -2.7 618,320 - -0.7 618,352 + -0.7 618,438 + +0.7 618,578 - -0.1 618,697 + -2.2 618,704 - BT0500 0.17 +0.3 618,803 - BT0500 0.24 +1.9 619,019 - BT0500 0.37 -1.1 619,082 - BT0500 0.41 +0.3 619,135 - BT0500 0.44 -0.1 619,280 - BT0500 0.53 -1.4 619,331 - BT0500 0.57 +0.3
Or see this region's nucleotide sequence