Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3193

Experiment: MoYLS4 with FCCP 2uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU3192 and DVU3193 are separated by 249 nucleotidesDVU3193 and engA are separated by 254 nucleotides DVU3192: DVU3192 - glycosyl transferase, group 1 family protein (TIGR), at 3,352,605 to 3,353,765 DVU3192 DVU3193: DVU3193 - DNA-binding domain, excisionase family (TIGR), at 3,354,015 to 3,354,926 DVU3193 DVU3194: engA - GTP-binding protein EngA (TIGR), at 3,355,181 to 3,356,656 engA Position (kb) 3354 3355Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3353.757 kb on + strandat 3353.776 kb on + strandat 3353.811 kb on + strandat 3353.824 kb on - strandat 3353.827 kb on + strandat 3353.887 kb on - strandat 3353.935 kb on + strandat 3353.944 kb on - strandat 3353.958 kb on - strandat 3353.965 kb on - strandat 3354.057 kb on - strandat 3354.057 kb on - strandat 3354.067 kb on - strandat 3354.067 kb on - strandat 3354.082 kb on - strandat 3354.191 kb on - strand, within DVU3193at 3354.240 kb on - strand, within DVU3193at 3354.336 kb on - strand, within DVU3193at 3354.355 kb on + strand, within DVU3193at 3354.376 kb on - strand, within DVU3193at 3354.524 kb on - strand, within DVU3193at 3354.679 kb on + strand, within DVU3193at 3354.684 kb on + strand, within DVU3193at 3354.684 kb on + strand, within DVU3193at 3354.687 kb on - strand, within DVU3193at 3354.757 kb on - strand, within DVU3193at 3354.757 kb on - strand, within DVU3193at 3354.759 kb on + strand, within DVU3193at 3354.778 kb on + strand, within DVU3193at 3354.786 kb on - strand, within DVU3193at 3354.803 kb on - strand, within DVU3193at 3354.803 kb on - strand, within DVU3193at 3354.858 kb on + strandat 3354.942 kb on - strandat 3354.988 kb on + strandat 3354.990 kb on + strandat 3354.996 kb on - strandat 3354.998 kb on - strandat 3355.069 kb on + strandat 3355.112 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with FCCP 2uM
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3,353,757 + -0.1
3,353,776 + +0.9
3,353,811 + +0.0
3,353,824 - -1.8
3,353,827 + +0.1
3,353,887 - -0.2
3,353,935 + -0.1
3,353,944 - +0.0
3,353,958 - -1.9
3,353,965 - -0.4
3,354,057 - -1.5
3,354,057 - -2.3
3,354,067 - -0.7
3,354,067 - +0.9
3,354,082 - -0.1
3,354,191 - DVU3193 0.19 -4.0
3,354,240 - DVU3193 0.25 -2.2
3,354,336 - DVU3193 0.35 -1.6
3,354,355 + DVU3193 0.37 -0.5
3,354,376 - DVU3193 0.40 -2.5
3,354,524 - DVU3193 0.56 -1.7
3,354,679 + DVU3193 0.73 -2.6
3,354,684 + DVU3193 0.73 -0.7
3,354,684 + DVU3193 0.73 +1.6
3,354,687 - DVU3193 0.74 -2.7
3,354,757 - DVU3193 0.81 -1.5
3,354,757 - DVU3193 0.81 -0.1
3,354,759 + DVU3193 0.82 -3.0
3,354,778 + DVU3193 0.84 -3.2
3,354,786 - DVU3193 0.85 -0.1
3,354,803 - DVU3193 0.86 -2.5
3,354,803 - DVU3193 0.86 -0.8
3,354,858 + -2.7
3,354,942 - -0.1
3,354,988 + -0.4
3,354,990 + +0.6
3,354,996 - +0.3
3,354,998 - -0.7
3,355,069 + -0.3
3,355,112 - +0.4

Or see this region's nucleotide sequence