Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3132

Experiment: MoYLS4 with FCCP 2uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU3131 and DVU3132 overlap by 4 nucleotidesDVU3132 and glpF are separated by 107 nucleotides DVU3131: DVU3131 - transcriptional regulator, putative (TIGR), at 3,277,423 to 3,278,370 DVU3131 DVU3132: DVU3132 - glycerol-3-phosphate dehydrogenase, FAD-dependent (TIGR), at 3,278,367 to 3,280,007 DVU3132 DVU3133: glpF - glycerol uptake facilitator protein (TIGR), at 3,280,115 to 3,280,870 glpF Position (kb) 3278 3279 3280 3281Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3277.634 kb on - strand, within DVU3131at 3277.754 kb on - strand, within DVU3131at 3277.767 kb on + strand, within DVU3131at 3277.820 kb on + strand, within DVU3131at 3277.828 kb on - strand, within DVU3131at 3277.896 kb on + strand, within DVU3131at 3277.905 kb on - strand, within DVU3131at 3277.946 kb on + strand, within DVU3131at 3277.954 kb on - strand, within DVU3131at 3277.983 kb on + strand, within DVU3131at 3277.983 kb on + strand, within DVU3131at 3277.991 kb on - strand, within DVU3131at 3278.025 kb on - strand, within DVU3131at 3278.148 kb on - strand, within DVU3131at 3278.214 kb on + strand, within DVU3131at 3278.214 kb on + strand, within DVU3131at 3278.221 kb on + strand, within DVU3131at 3278.292 kb on - strandat 3278.349 kb on + strandat 3278.364 kb on + strandat 3278.372 kb on - strandat 3278.420 kb on + strandat 3278.479 kb on + strandat 3278.493 kb on + strandat 3278.566 kb on + strand, within DVU3132at 3278.566 kb on + strand, within DVU3132at 3278.574 kb on - strand, within DVU3132at 3278.582 kb on + strand, within DVU3132at 3278.615 kb on + strand, within DVU3132at 3278.636 kb on + strand, within DVU3132at 3278.636 kb on + strand, within DVU3132at 3278.636 kb on + strand, within DVU3132at 3278.636 kb on + strand, within DVU3132at 3278.651 kb on - strand, within DVU3132at 3278.674 kb on - strand, within DVU3132at 3278.747 kb on - strand, within DVU3132at 3278.762 kb on + strand, within DVU3132at 3278.775 kb on - strand, within DVU3132at 3278.845 kb on - strand, within DVU3132at 3278.850 kb on + strand, within DVU3132at 3278.896 kb on + strand, within DVU3132at 3278.949 kb on - strand, within DVU3132at 3278.978 kb on + strand, within DVU3132at 3278.991 kb on + strand, within DVU3132at 3278.999 kb on - strand, within DVU3132at 3278.999 kb on - strand, within DVU3132at 3279.000 kb on + strand, within DVU3132at 3279.052 kb on + strand, within DVU3132at 3279.117 kb on - strand, within DVU3132at 3279.156 kb on + strand, within DVU3132at 3279.209 kb on + strand, within DVU3132at 3279.229 kb on + strand, within DVU3132at 3279.266 kb on - strand, within DVU3132at 3279.510 kb on + strand, within DVU3132at 3279.547 kb on + strand, within DVU3132at 3279.580 kb on + strand, within DVU3132at 3279.588 kb on - strand, within DVU3132at 3279.588 kb on - strand, within DVU3132at 3279.588 kb on - strand, within DVU3132at 3279.603 kb on - strand, within DVU3132at 3279.702 kb on - strand, within DVU3132at 3279.706 kb on + strand, within DVU3132at 3279.706 kb on + strand, within DVU3132at 3279.714 kb on - strand, within DVU3132at 3279.714 kb on - strand, within DVU3132at 3279.724 kb on + strand, within DVU3132at 3279.743 kb on + strand, within DVU3132at 3279.761 kb on - strand, within DVU3132at 3279.766 kb on - strand, within DVU3132at 3279.791 kb on + strand, within DVU3132at 3279.804 kb on + strand, within DVU3132at 3279.837 kb on + strand, within DVU3132at 3279.846 kb on + strandat 3279.858 kb on + strandat 3279.858 kb on + strandat 3279.868 kb on + strandat 3279.868 kb on + strandat 3279.868 kb on + strandat 3279.868 kb on + strandat 3279.868 kb on + strandat 3279.876 kb on - strandat 3279.876 kb on - strandat 3279.909 kb on + strandat 3280.027 kb on + strandat 3280.046 kb on - strandat 3280.223 kb on + strand, within glpFat 3280.297 kb on + strand, within glpFat 3280.305 kb on - strand, within glpFat 3280.375 kb on + strand, within glpFat 3280.458 kb on - strand, within glpFat 3280.460 kb on + strand, within glpFat 3280.463 kb on - strand, within glpFat 3280.468 kb on - strand, within glpFat 3280.598 kb on + strand, within glpFat 3280.788 kb on - strand, within glpFat 3280.859 kb on + strandat 3280.859 kb on + strandat 3280.859 kb on + strandat 3280.867 kb on - strandat 3280.867 kb on - strandat 3280.867 kb on - strandat 3280.879 kb on - strandat 3280.919 kb on + strandat 3280.921 kb on + strandat 3280.973 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with FCCP 2uM
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3,277,634 - DVU3131 0.22 -0.1
3,277,754 - DVU3131 0.35 -0.8
3,277,767 + DVU3131 0.36 -0.7
3,277,820 + DVU3131 0.42 -0.1
3,277,828 - DVU3131 0.43 -0.8
3,277,896 + DVU3131 0.50 -0.7
3,277,905 - DVU3131 0.51 +0.1
3,277,946 + DVU3131 0.55 +1.5
3,277,954 - DVU3131 0.56 -0.0
3,277,983 + DVU3131 0.59 -0.5
3,277,983 + DVU3131 0.59 +0.3
3,277,991 - DVU3131 0.60 -0.1
3,278,025 - DVU3131 0.64 +1.9
3,278,148 - DVU3131 0.76 -0.2
3,278,214 + DVU3131 0.83 -0.1
3,278,214 + DVU3131 0.83 +0.5
3,278,221 + DVU3131 0.84 +0.4
3,278,292 - +0.4
3,278,349 + +0.3
3,278,364 + +0.3
3,278,372 - +0.4
3,278,420 + +0.9
3,278,479 + +0.9
3,278,493 + -0.1
3,278,566 + DVU3132 0.12 -1.6
3,278,566 + DVU3132 0.12 -0.1
3,278,574 - DVU3132 0.13 -1.1
3,278,582 + DVU3132 0.13 -0.9
3,278,615 + DVU3132 0.15 +0.3
3,278,636 + DVU3132 0.16 -0.1
3,278,636 + DVU3132 0.16 -0.2
3,278,636 + DVU3132 0.16 +2.4
3,278,636 + DVU3132 0.16 -0.7
3,278,651 - DVU3132 0.17 +0.9
3,278,674 - DVU3132 0.19 +1.4
3,278,747 - DVU3132 0.23 +0.9
3,278,762 + DVU3132 0.24 -0.4
3,278,775 - DVU3132 0.25 +0.9
3,278,845 - DVU3132 0.29 -0.5
3,278,850 + DVU3132 0.29 +0.5
3,278,896 + DVU3132 0.32 -1.0
3,278,949 - DVU3132 0.35 -1.1
3,278,978 + DVU3132 0.37 +0.2
3,278,991 + DVU3132 0.38 +0.9
3,278,999 - DVU3132 0.39 +0.5
3,278,999 - DVU3132 0.39 -0.9
3,279,000 + DVU3132 0.39 -0.2
3,279,052 + DVU3132 0.42 -0.8
3,279,117 - DVU3132 0.46 -1.7
3,279,156 + DVU3132 0.48 -0.2
3,279,209 + DVU3132 0.51 -0.3
3,279,229 + DVU3132 0.53 -0.9
3,279,266 - DVU3132 0.55 -0.4
3,279,510 + DVU3132 0.70 -0.9
3,279,547 + DVU3132 0.72 -0.7
3,279,580 + DVU3132 0.74 +0.1
3,279,588 - DVU3132 0.74 -1.7
3,279,588 - DVU3132 0.74 -1.5
3,279,588 - DVU3132 0.74 -0.3
3,279,603 - DVU3132 0.75 -0.6
3,279,702 - DVU3132 0.81 +0.3
3,279,706 + DVU3132 0.82 +0.6
3,279,706 + DVU3132 0.82 -0.0
3,279,714 - DVU3132 0.82 -0.0
3,279,714 - DVU3132 0.82 +0.2
3,279,724 + DVU3132 0.83 -0.1
3,279,743 + DVU3132 0.84 -0.1
3,279,761 - DVU3132 0.85 -0.4
3,279,766 - DVU3132 0.85 +0.1
3,279,791 + DVU3132 0.87 +1.4
3,279,804 + DVU3132 0.88 +0.1
3,279,837 + DVU3132 0.90 +0.9
3,279,846 + +0.9
3,279,858 + -0.1
3,279,858 + -0.4
3,279,868 + +0.4
3,279,868 + +0.1
3,279,868 + +0.3
3,279,868 + +0.0
3,279,868 + -0.6
3,279,876 - -0.3
3,279,876 - -0.4
3,279,909 + -0.9
3,280,027 + -0.2
3,280,046 - -1.6
3,280,223 + glpF DVU3133 0.14 -2.0
3,280,297 + glpF DVU3133 0.24 -0.1
3,280,305 - glpF DVU3133 0.25 -1.1
3,280,375 + glpF DVU3133 0.34 -0.7
3,280,458 - glpF DVU3133 0.45 +0.9
3,280,460 + glpF DVU3133 0.46 -1.1
3,280,463 - glpF DVU3133 0.46 +0.9
3,280,468 - glpF DVU3133 0.47 +0.9
3,280,598 + glpF DVU3133 0.64 -0.5
3,280,788 - glpF DVU3133 0.89 +1.9
3,280,859 + -2.0
3,280,859 + +1.9
3,280,859 + -0.4
3,280,867 - +0.9
3,280,867 - +0.9
3,280,867 - +0.9
3,280,879 - -0.7
3,280,919 + +0.3
3,280,921 + +0.3
3,280,973 + -3.7

Or see this region's nucleotide sequence