Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2980

Experiment: MoYLS4 with FCCP 2uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2978 and DVU2979 are separated by 109 nucleotidesDVU2979 and pssA are separated by 62 nucleotidespssA and leuA are separated by 176 nucleotides DVU2978: DVU2978 - hydrolase, haloacid dehalogenase-like family (TIGR), at 3,085,457 to 3,086,089 DVU2978 DVU2979: DVU2979 - phosphatidylserine decarboxylase-related protein (TIGR), at 3,086,199 to 3,086,852 DVU2979 DVU2980: pssA - CDP-diacylglycerol--serine O-phosphatidyltransferase (TIGR), at 3,086,915 to 3,087,664 pssA DVU2981: leuA - 2-isopropylmalate synthase (TIGR), at 3,087,841 to 3,089,370 leuA Position (kb) 3086 3087 3088Strain fitness (log2 ratio) -2 -1 0 1at 3085.918 kb on - strand, within DVU2978at 3085.952 kb on - strand, within DVU2978at 3085.952 kb on - strand, within DVU2978at 3086.085 kb on - strandat 3086.156 kb on - strandat 3086.816 kb on + strandat 3086.842 kb on - strandat 3086.854 kb on - strandat 3086.854 kb on - strandat 3086.854 kb on - strandat 3086.854 kb on - strandat 3087.654 kb on + strandat 3087.654 kb on + strandat 3087.724 kb on + strandat 3087.823 kb on + strandat 3087.866 kb on + strandat 3087.866 kb on + strandat 3087.866 kb on + strandat 3087.874 kb on - strandat 3087.884 kb on - strandat 3087.912 kb on + strandat 3087.942 kb on + strandat 3088.020 kb on - strand, within leuAat 3088.067 kb on - strand, within leuAat 3088.088 kb on + strand, within leuAat 3088.125 kb on + strand, within leuAat 3088.159 kb on + strand, within leuAat 3088.203 kb on + strand, within leuAat 3088.238 kb on + strand, within leuAat 3088.279 kb on + strand, within leuAat 3088.324 kb on + strand, within leuAat 3088.482 kb on + strand, within leuAat 3088.572 kb on + strand, within leuAat 3088.580 kb on - strand, within leuAat 3088.580 kb on - strand, within leuA

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with FCCP 2uM
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3,085,918 - DVU2978 0.73 -0.1
3,085,952 - DVU2978 0.78 +0.9
3,085,952 - DVU2978 0.78 -0.1
3,086,085 - -0.4
3,086,156 - +0.9
3,086,816 + -0.7
3,086,842 - -0.1
3,086,854 - +0.9
3,086,854 - -1.4
3,086,854 - -1.2
3,086,854 - +0.9
3,087,654 + -0.4
3,087,654 + -1.5
3,087,724 + +0.9
3,087,823 + +0.3
3,087,866 + -0.3
3,087,866 + -0.5
3,087,866 + +0.2
3,087,874 - -0.7
3,087,884 - +0.9
3,087,912 + -2.1
3,087,942 + +0.3
3,088,020 - leuA DVU2981 0.12 -0.1
3,088,067 - leuA DVU2981 0.15 -0.1
3,088,088 + leuA DVU2981 0.16 -0.1
3,088,125 + leuA DVU2981 0.19 -1.1
3,088,159 + leuA DVU2981 0.21 +0.9
3,088,203 + leuA DVU2981 0.24 -0.1
3,088,238 + leuA DVU2981 0.26 -0.2
3,088,279 + leuA DVU2981 0.29 -0.3
3,088,324 + leuA DVU2981 0.32 -0.7
3,088,482 + leuA DVU2981 0.42 -2.4
3,088,572 + leuA DVU2981 0.48 +0.5
3,088,580 - leuA DVU2981 0.48 -0.7
3,088,580 - leuA DVU2981 0.48 -1.1

Or see this region's nucleotide sequence