Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2979

Experiment: MoYLS4 with FCCP 2uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2978 and DVU2979 are separated by 109 nucleotidesDVU2979 and pssA are separated by 62 nucleotidespssA and leuA are separated by 176 nucleotides DVU2978: DVU2978 - hydrolase, haloacid dehalogenase-like family (TIGR), at 3,085,457 to 3,086,089 DVU2978 DVU2979: DVU2979 - phosphatidylserine decarboxylase-related protein (TIGR), at 3,086,199 to 3,086,852 DVU2979 DVU2980: pssA - CDP-diacylglycerol--serine O-phosphatidyltransferase (TIGR), at 3,086,915 to 3,087,664 pssA DVU2981: leuA - 2-isopropylmalate synthase (TIGR), at 3,087,841 to 3,089,370 leuA Position (kb) 3086 3087Strain fitness (log2 ratio) -2 -1 0 1 2at 3085.245 kb on + strandat 3085.247 kb on + strandat 3085.249 kb on + strandat 3085.275 kb on - strandat 3085.304 kb on - strandat 3085.311 kb on - strandat 3085.338 kb on + strandat 3085.346 kb on - strandat 3085.357 kb on - strandat 3085.383 kb on + strandat 3085.388 kb on + strandat 3085.388 kb on + strandat 3085.410 kb on + strandat 3085.410 kb on + strandat 3085.446 kb on - strandat 3085.456 kb on - strandat 3085.473 kb on - strandat 3085.588 kb on - strand, within DVU2978at 3085.588 kb on - strand, within DVU2978at 3085.601 kb on - strand, within DVU2978at 3085.606 kb on + strand, within DVU2978at 3085.640 kb on - strand, within DVU2978at 3085.669 kb on - strand, within DVU2978at 3085.705 kb on + strand, within DVU2978at 3085.709 kb on - strand, within DVU2978at 3085.777 kb on + strand, within DVU2978at 3085.777 kb on + strand, within DVU2978at 3085.797 kb on + strand, within DVU2978at 3085.797 kb on + strand, within DVU2978at 3085.803 kb on - strand, within DVU2978at 3085.805 kb on - strand, within DVU2978at 3085.815 kb on + strand, within DVU2978at 3085.859 kb on + strand, within DVU2978at 3085.867 kb on - strand, within DVU2978at 3085.902 kb on + strand, within DVU2978at 3085.910 kb on + strand, within DVU2978at 3085.910 kb on - strand, within DVU2978at 3085.918 kb on - strand, within DVU2978at 3085.952 kb on - strand, within DVU2978at 3085.952 kb on - strand, within DVU2978at 3086.085 kb on - strandat 3086.156 kb on - strandat 3086.816 kb on + strandat 3086.842 kb on - strandat 3086.854 kb on - strandat 3086.854 kb on - strandat 3086.854 kb on - strandat 3086.854 kb on - strandat 3087.654 kb on + strandat 3087.654 kb on + strandat 3087.724 kb on + strandat 3087.823 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with FCCP 2uM
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3,085,245 + -1.7
3,085,247 + -0.9
3,085,249 + +0.0
3,085,275 - -1.4
3,085,304 - -0.4
3,085,311 - -0.6
3,085,338 + +0.3
3,085,346 - +1.2
3,085,357 - -0.0
3,085,383 + +0.7
3,085,388 + +0.3
3,085,388 + -0.1
3,085,410 + -0.7
3,085,410 + +0.1
3,085,446 - +0.1
3,085,456 - -0.3
3,085,473 - -0.5
3,085,588 - DVU2978 0.21 -1.1
3,085,588 - DVU2978 0.21 -0.7
3,085,601 - DVU2978 0.23 +0.7
3,085,606 + DVU2978 0.24 -0.0
3,085,640 - DVU2978 0.29 -0.4
3,085,669 - DVU2978 0.33 +0.2
3,085,705 + DVU2978 0.39 +0.0
3,085,709 - DVU2978 0.40 -0.1
3,085,777 + DVU2978 0.51 +0.2
3,085,777 + DVU2978 0.51 -0.2
3,085,797 + DVU2978 0.54 -0.4
3,085,797 + DVU2978 0.54 +0.5
3,085,803 - DVU2978 0.55 -0.7
3,085,805 - DVU2978 0.55 -1.8
3,085,815 + DVU2978 0.57 +0.3
3,085,859 + DVU2978 0.64 +2.5
3,085,867 - DVU2978 0.65 -0.7
3,085,902 + DVU2978 0.70 +0.9
3,085,910 + DVU2978 0.72 -0.4
3,085,910 - DVU2978 0.72 -0.1
3,085,918 - DVU2978 0.73 -0.1
3,085,952 - DVU2978 0.78 +0.9
3,085,952 - DVU2978 0.78 -0.1
3,086,085 - -0.4
3,086,156 - +0.9
3,086,816 + -0.7
3,086,842 - -0.1
3,086,854 - +0.9
3,086,854 - -1.4
3,086,854 - -1.2
3,086,854 - +0.9
3,087,654 + -0.4
3,087,654 + -1.5
3,087,724 + +0.9
3,087,823 + +0.3

Or see this region's nucleotide sequence