Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2817

Experiment: MoYLS4 with FCCP 2uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2816 and acrA are separated by 15 nucleotidesacrA and DVU2818 are separated by 74 nucleotidesDVU2818 and DVU2819 are separated by 163 nucleotides DVU2816: DVU2816 - multidrug resistance protein (TIGR), at 2,920,010 to 2,923,222 DVU2816 DVU2817: acrA - multidrug resistance protein (TIGR), at 2,923,238 to 2,924,491 acrA DVU2818: DVU2818 - hypothetical protein (TIGR), at 2,924,566 to 2,924,784 DVU2818 DVU2819: DVU2819 - transcriptional regulator, TetR family (TIGR), at 2,924,948 to 2,925,556 DVU2819 Position (kb) 2923 2924 2925Strain fitness (log2 ratio) -2 -1 0 1 2at 2922.315 kb on + strand, within DVU2816at 2922.315 kb on + strand, within DVU2816at 2922.383 kb on - strand, within DVU2816at 2922.393 kb on + strand, within DVU2816at 2922.410 kb on + strand, within DVU2816at 2922.414 kb on + strand, within DVU2816at 2922.454 kb on - strand, within DVU2816at 2922.569 kb on - strand, within DVU2816at 2922.598 kb on - strand, within DVU2816at 2922.603 kb on - strand, within DVU2816at 2922.625 kb on + strand, within DVU2816at 2922.655 kb on + strand, within DVU2816at 2922.737 kb on - strand, within DVU2816at 2922.747 kb on - strand, within DVU2816at 2922.764 kb on + strand, within DVU2816at 2922.778 kb on + strand, within DVU2816at 2922.828 kb on + strand, within DVU2816at 2922.861 kb on + strand, within DVU2816at 2922.879 kb on - strand, within DVU2816at 2922.891 kb on + strand, within DVU2816at 2922.894 kb on - strand, within DVU2816at 2922.896 kb on + strand, within DVU2816at 2922.944 kb on + strandat 2922.964 kb on + strandat 2922.998 kb on - strandat 2923.056 kb on + strandat 2923.083 kb on + strandat 2923.176 kb on + strandat 2923.379 kb on - strand, within acrAat 2923.397 kb on + strand, within acrAat 2923.457 kb on + strand, within acrAat 2923.520 kb on - strand, within acrAat 2923.590 kb on + strand, within acrAat 2923.594 kb on + strand, within acrAat 2923.626 kb on - strand, within acrAat 2923.680 kb on - strand, within acrAat 2923.698 kb on - strand, within acrAat 2923.727 kb on - strand, within acrAat 2923.836 kb on + strand, within acrAat 2923.836 kb on + strand, within acrAat 2923.844 kb on - strand, within acrAat 2923.844 kb on - strand, within acrAat 2923.874 kb on + strand, within acrAat 2923.874 kb on - strand, within acrAat 2923.884 kb on - strand, within acrAat 2923.966 kb on - strand, within acrAat 2923.991 kb on + strand, within acrAat 2924.020 kb on - strand, within acrAat 2924.034 kb on + strand, within acrAat 2924.034 kb on + strand, within acrAat 2924.034 kb on + strand, within acrAat 2924.042 kb on - strand, within acrAat 2924.042 kb on - strand, within acrAat 2924.195 kb on + strand, within acrAat 2924.219 kb on - strand, within acrAat 2924.337 kb on + strand, within acrAat 2924.345 kb on - strand, within acrAat 2924.494 kb on + strandat 2924.497 kb on - strandat 2924.502 kb on - strandat 2924.528 kb on + strandat 2924.603 kb on - strand, within DVU2818at 2924.603 kb on - strand, within DVU2818at 2924.649 kb on + strand, within DVU2818at 2924.718 kb on + strand, within DVU2818at 2924.894 kb on - strandat 2924.903 kb on - strandat 2924.936 kb on + strandat 2924.938 kb on + strandat 2924.951 kb on + strandat 2925.018 kb on - strand, within DVU2819at 2925.083 kb on + strand, within DVU2819at 2925.083 kb on + strand, within DVU2819at 2925.208 kb on - strand, within DVU2819at 2925.361 kb on + strand, within DVU2819at 2925.436 kb on + strand, within DVU2819at 2925.436 kb on + strand, within DVU2819at 2925.451 kb on + strand, within DVU2819

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with FCCP 2uM
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2,922,315 + DVU2816 0.72 -0.3
2,922,315 + DVU2816 0.72 -0.1
2,922,383 - DVU2816 0.74 -0.1
2,922,393 + DVU2816 0.74 +0.7
2,922,410 + DVU2816 0.75 -0.5
2,922,414 + DVU2816 0.75 +0.1
2,922,454 - DVU2816 0.76 -0.1
2,922,569 - DVU2816 0.80 -0.6
2,922,598 - DVU2816 0.81 -0.0
2,922,603 - DVU2816 0.81 -0.3
2,922,625 + DVU2816 0.81 +1.9
2,922,655 + DVU2816 0.82 +0.1
2,922,737 - DVU2816 0.85 +0.0
2,922,747 - DVU2816 0.85 -1.9
2,922,764 + DVU2816 0.86 -1.4
2,922,778 + DVU2816 0.86 +0.3
2,922,828 + DVU2816 0.88 -1.6
2,922,861 + DVU2816 0.89 -1.1
2,922,879 - DVU2816 0.89 -1.4
2,922,891 + DVU2816 0.90 -0.1
2,922,894 - DVU2816 0.90 -0.5
2,922,896 + DVU2816 0.90 -0.1
2,922,944 + -0.3
2,922,964 + -0.2
2,922,998 - +0.0
2,923,056 + -0.5
2,923,083 + -1.1
2,923,176 + -0.9
2,923,379 - acrA DVU2817 0.11 +0.5
2,923,397 + acrA DVU2817 0.13 +0.6
2,923,457 + acrA DVU2817 0.17 +0.2
2,923,520 - acrA DVU2817 0.22 +0.1
2,923,590 + acrA DVU2817 0.28 -0.3
2,923,594 + acrA DVU2817 0.28 +2.5
2,923,626 - acrA DVU2817 0.31 +0.1
2,923,680 - acrA DVU2817 0.35 -2.0
2,923,698 - acrA DVU2817 0.37 -0.1
2,923,727 - acrA DVU2817 0.39 -0.1
2,923,836 + acrA DVU2817 0.48 -0.1
2,923,836 + acrA DVU2817 0.48 -0.6
2,923,844 - acrA DVU2817 0.48 -0.0
2,923,844 - acrA DVU2817 0.48 -0.5
2,923,874 + acrA DVU2817 0.51 -0.5
2,923,874 - acrA DVU2817 0.51 -0.1
2,923,884 - acrA DVU2817 0.52 +1.2
2,923,966 - acrA DVU2817 0.58 -0.4
2,923,991 + acrA DVU2817 0.60 -0.6
2,924,020 - acrA DVU2817 0.62 -1.6
2,924,034 + acrA DVU2817 0.63 -1.5
2,924,034 + acrA DVU2817 0.63 +0.2
2,924,034 + acrA DVU2817 0.63 +0.7
2,924,042 - acrA DVU2817 0.64 -0.1
2,924,042 - acrA DVU2817 0.64 -0.0
2,924,195 + acrA DVU2817 0.76 -1.1
2,924,219 - acrA DVU2817 0.78 -0.3
2,924,337 + acrA DVU2817 0.88 +0.6
2,924,345 - acrA DVU2817 0.88 -0.1
2,924,494 + -0.2
2,924,497 - +1.3
2,924,502 - -0.1
2,924,528 + -0.0
2,924,603 - DVU2818 0.17 +0.2
2,924,603 - DVU2818 0.17 +0.8
2,924,649 + DVU2818 0.38 +0.1
2,924,718 + DVU2818 0.69 -0.8
2,924,894 - +0.1
2,924,903 - -0.1
2,924,936 + +0.7
2,924,938 + +0.3
2,924,951 + -0.6
2,925,018 - DVU2819 0.11 -1.1
2,925,083 + DVU2819 0.22 -1.0
2,925,083 + DVU2819 0.22 -1.2
2,925,208 - DVU2819 0.43 -0.8
2,925,361 + DVU2819 0.68 -0.1
2,925,436 + DVU2819 0.80 -0.1
2,925,436 + DVU2819 0.80 -1.4
2,925,451 + DVU2819 0.83 -1.0

Or see this region's nucleotide sequence