Experiment: MoYLS4 with FCCP 2uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2233 and DVU2234 are separated by 344 nucleotides DVU2234 and DVU2235 are separated by 108 nucleotides DVU2235 and DVU2236 are separated by 9 nucleotides DVU2236 and cbiB are separated by 58 nucleotides
DVU2233: DVU2233 - conserved hypothetical protein (TIGR), at 2,326,274 to 2,327,251
DVU2233
DVU2234: DVU2234 - conserved hypothetical protein TIGR00275 (TIGR), at 2,327,596 to 2,328,765
DVU2234
DVU2235: DVU2235 - conserved hypothetical protein (TIGR), at 2,328,874 to 2,329,083
DVU2235
DVU2236: DVU2236 - hypothetical protein (TIGR), at 2,329,093 to 2,329,197
DVU2236
DVU2237: cbiB - cobalamin biosynthesis protein CobD, putative (TIGR), at 2,329,256 to 2,330,218
cbiB
Position (kb)
2327
2328
2329 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2326.640 kb on - strand, within DVU2233 at 2326.735 kb on + strand, within DVU2233 at 2326.782 kb on - strand, within DVU2233 at 2326.847 kb on + strand, within DVU2233 at 2326.847 kb on + strand, within DVU2233 at 2326.861 kb on - strand, within DVU2233 at 2326.936 kb on - strand, within DVU2233 at 2326.962 kb on - strand, within DVU2233 at 2326.965 kb on + strand, within DVU2233 at 2327.005 kb on - strand, within DVU2233 at 2327.074 kb on + strand, within DVU2233 at 2327.176 kb on + strand at 2327.291 kb on + strand at 2327.291 kb on + strand at 2327.323 kb on - strand at 2327.350 kb on + strand at 2327.381 kb on + strand at 2327.389 kb on + strand at 2327.399 kb on + strand at 2327.448 kb on + strand at 2327.461 kb on - strand at 2327.514 kb on + strand at 2327.514 kb on + strand at 2327.532 kb on - strand at 2327.533 kb on - strand at 2327.535 kb on + strand at 2327.588 kb on + strand at 2327.600 kb on - strand at 2327.646 kb on + strand at 2327.649 kb on - strand at 2327.649 kb on - strand at 2327.649 kb on - strand at 2327.679 kb on - strand at 2327.689 kb on - strand at 2327.767 kb on - strand, within DVU2234 at 2327.779 kb on - strand, within DVU2234 at 2327.951 kb on + strand, within DVU2234 at 2328.016 kb on - strand, within DVU2234 at 2328.142 kb on - strand, within DVU2234 at 2328.160 kb on - strand, within DVU2234 at 2328.385 kb on - strand, within DVU2234 at 2328.427 kb on + strand, within DVU2234 at 2328.646 kb on + strand, within DVU2234 at 2328.672 kb on - strand at 2328.735 kb on - strand at 2329.097 kb on - strand at 2329.097 kb on - strand at 2329.183 kb on + strand, within DVU2236 at 2329.341 kb on - strand at 2329.378 kb on + strand, within cbiB at 2329.378 kb on - strand, within cbiB at 2329.408 kb on + strand, within cbiB at 2329.623 kb on + strand, within cbiB at 2329.635 kb on + strand, within cbiB
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with FCCP 2uM remove 2,326,640 - DVU2233 0.37 -0.2 2,326,735 + DVU2233 0.47 -0.5 2,326,782 - DVU2233 0.52 +0.6 2,326,847 + DVU2233 0.59 +0.4 2,326,847 + DVU2233 0.59 -0.2 2,326,861 - DVU2233 0.60 -0.1 2,326,936 - DVU2233 0.68 -0.3 2,326,962 - DVU2233 0.70 -0.6 2,326,965 + DVU2233 0.71 +1.0 2,327,005 - DVU2233 0.75 -0.6 2,327,074 + DVU2233 0.82 -1.4 2,327,176 + +0.2 2,327,291 + -1.6 2,327,291 + +0.1 2,327,323 - -2.1 2,327,350 + +0.0 2,327,381 + -0.1 2,327,389 + -1.3 2,327,399 + -0.5 2,327,448 + -0.3 2,327,461 - -0.0 2,327,514 + -1.1 2,327,514 + +0.8 2,327,532 - -0.3 2,327,533 - +0.2 2,327,535 + +0.6 2,327,588 + +0.2 2,327,600 - -0.9 2,327,646 + -0.0 2,327,649 - +0.4 2,327,649 - +3.6 2,327,649 - -0.5 2,327,679 - +0.5 2,327,689 - -0.3 2,327,767 - DVU2234 0.15 -0.8 2,327,779 - DVU2234 0.16 -0.7 2,327,951 + DVU2234 0.30 +0.0 2,328,016 - DVU2234 0.36 -0.6 2,328,142 - DVU2234 0.47 -0.7 2,328,160 - DVU2234 0.48 -0.8 2,328,385 - DVU2234 0.67 -0.4 2,328,427 + DVU2234 0.71 +0.2 2,328,646 + DVU2234 0.90 -2.5 2,328,672 - -0.2 2,328,735 - +1.0 2,329,097 - +0.3 2,329,097 - -1.3 2,329,183 + DVU2236 0.86 +0.6 2,329,341 - +0.5 2,329,378 + cbiB DVU2237 0.13 +0.7 2,329,378 - cbiB DVU2237 0.13 +0.6 2,329,408 + cbiB DVU2237 0.16 +0.3 2,329,623 + cbiB DVU2237 0.38 +1.3 2,329,635 + cbiB DVU2237 0.39 -0.6
Or see this region's nucleotide sequence