Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2234

Experiment: MoYLS4 with FCCP 2uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2233 and DVU2234 are separated by 344 nucleotidesDVU2234 and DVU2235 are separated by 108 nucleotidesDVU2235 and DVU2236 are separated by 9 nucleotidesDVU2236 and cbiB are separated by 58 nucleotides DVU2233: DVU2233 - conserved hypothetical protein (TIGR), at 2,326,274 to 2,327,251 DVU2233 DVU2234: DVU2234 - conserved hypothetical protein TIGR00275 (TIGR), at 2,327,596 to 2,328,765 DVU2234 DVU2235: DVU2235 - conserved hypothetical protein (TIGR), at 2,328,874 to 2,329,083 DVU2235 DVU2236: DVU2236 - hypothetical protein (TIGR), at 2,329,093 to 2,329,197 DVU2236 DVU2237: cbiB - cobalamin biosynthesis protein CobD, putative (TIGR), at 2,329,256 to 2,330,218 cbiB Position (kb) 2327 2328 2329Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2326.640 kb on - strand, within DVU2233at 2326.735 kb on + strand, within DVU2233at 2326.782 kb on - strand, within DVU2233at 2326.847 kb on + strand, within DVU2233at 2326.847 kb on + strand, within DVU2233at 2326.861 kb on - strand, within DVU2233at 2326.936 kb on - strand, within DVU2233at 2326.962 kb on - strand, within DVU2233at 2326.965 kb on + strand, within DVU2233at 2327.005 kb on - strand, within DVU2233at 2327.074 kb on + strand, within DVU2233at 2327.176 kb on + strandat 2327.291 kb on + strandat 2327.291 kb on + strandat 2327.323 kb on - strandat 2327.350 kb on + strandat 2327.381 kb on + strandat 2327.389 kb on + strandat 2327.399 kb on + strandat 2327.448 kb on + strandat 2327.461 kb on - strandat 2327.514 kb on + strandat 2327.514 kb on + strandat 2327.532 kb on - strandat 2327.533 kb on - strandat 2327.535 kb on + strandat 2327.588 kb on + strandat 2327.600 kb on - strandat 2327.646 kb on + strandat 2327.649 kb on - strandat 2327.649 kb on - strandat 2327.649 kb on - strandat 2327.679 kb on - strandat 2327.689 kb on - strandat 2327.767 kb on - strand, within DVU2234at 2327.779 kb on - strand, within DVU2234at 2327.951 kb on + strand, within DVU2234at 2328.016 kb on - strand, within DVU2234at 2328.142 kb on - strand, within DVU2234at 2328.160 kb on - strand, within DVU2234at 2328.385 kb on - strand, within DVU2234at 2328.427 kb on + strand, within DVU2234at 2328.646 kb on + strand, within DVU2234at 2328.672 kb on - strandat 2328.735 kb on - strandat 2329.097 kb on - strandat 2329.097 kb on - strandat 2329.183 kb on + strand, within DVU2236at 2329.341 kb on - strandat 2329.378 kb on + strand, within cbiBat 2329.378 kb on - strand, within cbiBat 2329.408 kb on + strand, within cbiBat 2329.623 kb on + strand, within cbiBat 2329.635 kb on + strand, within cbiB

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with FCCP 2uM
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2,326,640 - DVU2233 0.37 -0.2
2,326,735 + DVU2233 0.47 -0.5
2,326,782 - DVU2233 0.52 +0.6
2,326,847 + DVU2233 0.59 +0.4
2,326,847 + DVU2233 0.59 -0.2
2,326,861 - DVU2233 0.60 -0.1
2,326,936 - DVU2233 0.68 -0.3
2,326,962 - DVU2233 0.70 -0.6
2,326,965 + DVU2233 0.71 +1.0
2,327,005 - DVU2233 0.75 -0.6
2,327,074 + DVU2233 0.82 -1.4
2,327,176 + +0.2
2,327,291 + -1.6
2,327,291 + +0.1
2,327,323 - -2.1
2,327,350 + +0.0
2,327,381 + -0.1
2,327,389 + -1.3
2,327,399 + -0.5
2,327,448 + -0.3
2,327,461 - -0.0
2,327,514 + -1.1
2,327,514 + +0.8
2,327,532 - -0.3
2,327,533 - +0.2
2,327,535 + +0.6
2,327,588 + +0.2
2,327,600 - -0.9
2,327,646 + -0.0
2,327,649 - +0.4
2,327,649 - +3.6
2,327,649 - -0.5
2,327,679 - +0.5
2,327,689 - -0.3
2,327,767 - DVU2234 0.15 -0.8
2,327,779 - DVU2234 0.16 -0.7
2,327,951 + DVU2234 0.30 +0.0
2,328,016 - DVU2234 0.36 -0.6
2,328,142 - DVU2234 0.47 -0.7
2,328,160 - DVU2234 0.48 -0.8
2,328,385 - DVU2234 0.67 -0.4
2,328,427 + DVU2234 0.71 +0.2
2,328,646 + DVU2234 0.90 -2.5
2,328,672 - -0.2
2,328,735 - +1.0
2,329,097 - +0.3
2,329,097 - -1.3
2,329,183 + DVU2236 0.86 +0.6
2,329,341 - +0.5
2,329,378 + cbiB DVU2237 0.13 +0.7
2,329,378 - cbiB DVU2237 0.13 +0.6
2,329,408 + cbiB DVU2237 0.16 +0.3
2,329,623 + cbiB DVU2237 0.38 +1.3
2,329,635 + cbiB DVU2237 0.39 -0.6

Or see this region's nucleotide sequence