Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1935

Experiment: MoYLS4 with FCCP 2uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1933 and phnE are separated by 92 nucleotidesphnE and phnE overlap by 4 nucleotidesphnE and phnC overlap by 13 nucleotidesphnC and DVU1937 are separated by 76 nucleotides DVU1933: DVU1933 - peptidase, PfpI family (TIGR), at 2,006,535 to 2,007,056 DVU1933 DVU1934: phnE - phosphonate ABC transporter, permease protein (TIGR), at 2,007,149 to 2,007,949 phnE DVU1935: phnE - phosphonate ABC transporter, permease protein (TIGR), at 2,007,946 to 2,008,743 phnE DVU1936: phnC - phosphonate ABC transporter, ATP-binding protein (TIGR), at 2,008,731 to 2,009,528 phnC DVU1937: DVU1937 - phosphonate ABC transporter, periplasmic phosphonate-binding protein, putative (TIGR), at 2,009,605 to 2,010,618 DVU1937 Position (kb) 2007 2008 2009Strain fitness (log2 ratio) -2 -1 0 1 2at 2006.959 kb on - strand, within DVU1933at 2007.032 kb on - strandat 2007.438 kb on - strand, within phnEat 2007.561 kb on + strand, within phnEat 2007.561 kb on + strand, within phnEat 2007.672 kb on + strand, within phnEat 2007.672 kb on + strand, within phnEat 2007.680 kb on - strand, within phnEat 2007.680 kb on - strand, within phnEat 2007.680 kb on - strand, within phnEat 2007.718 kb on - strand, within phnEat 2007.838 kb on - strand, within phnEat 2007.840 kb on - strand, within phnEat 2008.138 kb on - strand, within phnEat 2008.186 kb on + strand, within phnEat 2008.196 kb on + strand, within phnEat 2008.435 kb on + strand, within phnEat 2008.476 kb on + strand, within phnEat 2008.556 kb on + strand, within phnEat 2008.684 kb on - strandat 2008.912 kb on + strand, within phnCat 2009.256 kb on + strand, within phnCat 2009.279 kb on - strand, within phnCat 2009.291 kb on - strand, within phnCat 2009.397 kb on - strand, within phnCat 2009.416 kb on - strand, within phnCat 2009.445 kb on + strand, within phnCat 2009.455 kb on + strandat 2009.463 kb on - strandat 2009.528 kb on + strandat 2009.674 kb on + strandat 2009.711 kb on + strand, within DVU1937

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with FCCP 2uM
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2,006,959 - DVU1933 0.81 -0.7
2,007,032 - -0.2
2,007,438 - phnE DVU1934 0.36 -0.8
2,007,561 + phnE DVU1934 0.51 +0.2
2,007,561 + phnE DVU1934 0.51 +0.3
2,007,672 + phnE DVU1934 0.65 -0.1
2,007,672 + phnE DVU1934 0.65 +1.7
2,007,680 - phnE DVU1934 0.66 -0.0
2,007,680 - phnE DVU1934 0.66 +0.2
2,007,680 - phnE DVU1934 0.66 +0.0
2,007,718 - phnE DVU1934 0.71 +0.1
2,007,838 - phnE DVU1934 0.86 -0.1
2,007,840 - phnE DVU1934 0.86 +0.5
2,008,138 - phnE DVU1935 0.24 -0.7
2,008,186 + phnE DVU1935 0.30 +0.6
2,008,196 + phnE DVU1935 0.31 +0.5
2,008,435 + phnE DVU1935 0.61 -0.6
2,008,476 + phnE DVU1935 0.66 -0.6
2,008,556 + phnE DVU1935 0.76 -0.2
2,008,684 - -0.0
2,008,912 + phnC DVU1936 0.23 -0.0
2,009,256 + phnC DVU1936 0.66 +0.0
2,009,279 - phnC DVU1936 0.69 +0.3
2,009,291 - phnC DVU1936 0.70 +0.9
2,009,397 - phnC DVU1936 0.83 -0.1
2,009,416 - phnC DVU1936 0.86 +0.7
2,009,445 + phnC DVU1936 0.89 +0.4
2,009,455 + -0.5
2,009,463 - +0.2
2,009,528 + -2.1
2,009,674 + +2.0
2,009,711 + DVU1937 0.10 -0.1

Or see this region's nucleotide sequence