Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1846

Experiment: MoYLS4 with FCCP 2uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU1843 and DVU1844 overlap by 17 nucleotidesDVU1844 and DVU1845 overlap by 4 nucleotidesDVU1845 and pgsA are separated by 29 nucleotidespgsA and DVU1847 are separated by 118 nucleotides DVU1843: DVU1843 - hypothetical protein (TIGR), at 1,913,546 to 1,914,499 DVU1843 DVU1844: DVU1844 - septum formation initiator family protein (TIGR), at 1,914,483 to 1,914,812 DVU1844 DVU1845: DVU1845 - hypothetical protein (TIGR), at 1,914,809 to 1,915,081 DVU1845 DVU1846: pgsA - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (TIGR), at 1,915,111 to 1,915,668 pgsA DVU1847: DVU1847 - conserved hypothetical protein (TIGR), at 1,915,787 to 1,916,680 DVU1847 Position (kb) 1915 1916Strain fitness (log2 ratio) -1 0 1at 1914.202 kb on + strand, within DVU1843at 1914.270 kb on + strand, within DVU1843at 1914.535 kb on + strand, within DVU1844at 1915.108 kb on + strandat 1915.720 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with FCCP 2uM
remove
1,914,202 + DVU1843 0.69 -1.0
1,914,270 + DVU1843 0.76 -1.7
1,914,535 + DVU1844 0.16 +0.8
1,915,108 + +0.7
1,915,720 - -0.2

Or see this region's nucleotide sequence