Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1784

Experiment: MoYLS4 with FCCP 2uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1782 and DVU1783 overlap by 8 nucleotidesDVU1783 and DVU1784 are separated by 171 nucleotidesDVU1784 and DVU1785 are separated by 203 nucleotides DVU1782: DVU1782 - iron-sulfur cluster-binding protein (TIGR), at 1,844,586 to 1,846,013 DVU1782 DVU1783: DVU1783 - cysteine-rich domain protein (TIGR), at 1,846,006 to 1,846,758 DVU1783 DVU1784: DVU1784 - oxidoreductase, short-chain dehydrogenase/reductase family (TIGR), at 1,846,930 to 1,847,691 DVU1784 DVU1785: DVU1785 - membrane protein, MarC family (TIGR), at 1,847,895 to 1,848,497 DVU1785 Position (kb) 1846 1847 1848Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1845.998 kb on - strandat 1846.033 kb on - strandat 1846.048 kb on + strandat 1846.048 kb on + strandat 1846.053 kb on + strandat 1846.243 kb on + strand, within DVU1783at 1846.314 kb on + strand, within DVU1783at 1846.355 kb on + strand, within DVU1783at 1846.491 kb on - strand, within DVU1783at 1846.528 kb on - strand, within DVU1783at 1846.618 kb on - strand, within DVU1783at 1846.633 kb on + strand, within DVU1783at 1846.730 kb on + strandat 1846.738 kb on - strandat 1846.738 kb on - strandat 1846.768 kb on - strandat 1846.787 kb on + strandat 1846.886 kb on + strandat 1846.914 kb on + strandat 1846.929 kb on - strandat 1846.930 kb on + strandat 1846.938 kb on - strandat 1847.079 kb on - strand, within DVU1784at 1847.099 kb on - strand, within DVU1784at 1847.109 kb on + strand, within DVU1784at 1847.142 kb on + strand, within DVU1784at 1847.256 kb on + strand, within DVU1784at 1847.276 kb on + strand, within DVU1784at 1847.394 kb on - strand, within DVU1784at 1847.428 kb on + strand, within DVU1784at 1847.433 kb on + strand, within DVU1784at 1847.543 kb on - strand, within DVU1784at 1847.657 kb on - strandat 1847.722 kb on + strandat 1847.807 kb on + strandat 1847.959 kb on + strand, within DVU1785at 1847.990 kb on - strand, within DVU1785at 1848.130 kb on + strand, within DVU1785at 1848.164 kb on - strand, within DVU1785at 1848.220 kb on - strand, within DVU1785at 1848.300 kb on + strand, within DVU1785at 1848.368 kb on - strand, within DVU1785at 1848.426 kb on - strand, within DVU1785at 1848.475 kb on - strandat 1848.505 kb on - strandat 1848.553 kb on - strandat 1848.654 kb on + strandat 1848.662 kb on - strandat 1848.671 kb on + strandat 1848.679 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with FCCP 2uM
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1,845,998 - +1.2
1,846,033 - -0.1
1,846,048 + +0.6
1,846,048 + +0.2
1,846,053 + -0.3
1,846,243 + DVU1783 0.31 +2.1
1,846,314 + DVU1783 0.41 -0.5
1,846,355 + DVU1783 0.46 -0.4
1,846,491 - DVU1783 0.64 -2.9
1,846,528 - DVU1783 0.69 -0.3
1,846,618 - DVU1783 0.81 -0.1
1,846,633 + DVU1783 0.83 +0.1
1,846,730 + -0.1
1,846,738 - +0.3
1,846,738 - -0.9
1,846,768 - -2.1
1,846,787 + -0.1
1,846,886 + -0.1
1,846,914 + +1.2
1,846,929 - -0.7
1,846,930 + +0.0
1,846,938 - +1.1
1,847,079 - DVU1784 0.20 -0.2
1,847,099 - DVU1784 0.22 -0.2
1,847,109 + DVU1784 0.23 -0.5
1,847,142 + DVU1784 0.28 +0.1
1,847,256 + DVU1784 0.43 +1.6
1,847,276 + DVU1784 0.45 -0.1
1,847,394 - DVU1784 0.61 -0.3
1,847,428 + DVU1784 0.65 -0.4
1,847,433 + DVU1784 0.66 +2.6
1,847,543 - DVU1784 0.80 -2.6
1,847,657 - -1.7
1,847,722 + +0.9
1,847,807 + +0.6
1,847,959 + DVU1785 0.11 -0.7
1,847,990 - DVU1785 0.16 +0.1
1,848,130 + DVU1785 0.39 +0.1
1,848,164 - DVU1785 0.45 -0.1
1,848,220 - DVU1785 0.54 +0.8
1,848,300 + DVU1785 0.67 +0.1
1,848,368 - DVU1785 0.78 -0.1
1,848,426 - DVU1785 0.88 -1.5
1,848,475 - +1.1
1,848,505 - +2.6
1,848,553 - -0.8
1,848,654 + -0.1
1,848,662 - +0.0
1,848,671 + +0.1
1,848,679 - -1.5

Or see this region's nucleotide sequence