Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1688

Experiment: MoYLS4 with FCCP 2uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1686 and DVU1687 overlap by 4 nucleotidesDVU1687 and DVU1688 overlap by 4 nucleotidesDVU1688 and DVU1690 are separated by 567 nucleotides DVU1686: DVU1686 - ATPase, AAA family (TIGR), at 1,764,863 to 1,766,098 DVU1686 DVU1687: DVU1687 - glycosyl transferase, group 2 family protein (TIGR), at 1,766,095 to 1,766,802 DVU1687 DVU1688: DVU1688 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, putative (TIGR), at 1,766,799 to 1,767,608 DVU1688 DVU1690: DVU1690 - transcriptional regulator, TetR family (TIGR), at 1,768,176 to 1,768,745 DVU1690 Position (kb) 1766 1767 1768Strain fitness (log2 ratio) -1 0 1 2 3at 1765.922 kb on + strand, within DVU1686at 1765.922 kb on + strand, within DVU1686at 1765.922 kb on + strand, within DVU1686at 1765.922 kb on + strand, within DVU1686at 1765.922 kb on + strand, within DVU1686at 1765.929 kb on + strand, within DVU1686at 1765.930 kb on - strand, within DVU1686at 1765.930 kb on - strand, within DVU1686at 1766.037 kb on - strandat 1766.099 kb on + strandat 1766.109 kb on + strandat 1766.140 kb on - strandat 1766.160 kb on - strandat 1766.259 kb on + strand, within DVU1687at 1766.267 kb on - strand, within DVU1687at 1766.337 kb on + strand, within DVU1687at 1766.505 kb on + strand, within DVU1687at 1766.513 kb on - strand, within DVU1687at 1766.520 kb on - strand, within DVU1687at 1766.539 kb on - strand, within DVU1687at 1766.671 kb on + strand, within DVU1687at 1766.679 kb on - strand, within DVU1687at 1768.057 kb on - strandat 1768.085 kb on - strandat 1768.127 kb on - strandat 1768.151 kb on - strandat 1768.279 kb on + strand, within DVU1690at 1768.344 kb on - strand, within DVU1690at 1768.410 kb on + strand, within DVU1690

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with FCCP 2uM
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1,765,922 + DVU1686 0.86 -0.7
1,765,922 + DVU1686 0.86 +0.1
1,765,922 + DVU1686 0.86 +1.1
1,765,922 + DVU1686 0.86 -1.6
1,765,922 + DVU1686 0.86 -0.8
1,765,929 + DVU1686 0.86 +0.3
1,765,930 - DVU1686 0.86 -0.5
1,765,930 - DVU1686 0.86 +0.1
1,766,037 - -0.9
1,766,099 + -0.4
1,766,109 + +0.6
1,766,140 - -0.2
1,766,160 - +1.1
1,766,259 + DVU1687 0.23 -0.6
1,766,267 - DVU1687 0.24 -0.1
1,766,337 + DVU1687 0.34 -0.2
1,766,505 + DVU1687 0.58 -0.2
1,766,513 - DVU1687 0.59 +0.2
1,766,520 - DVU1687 0.60 +0.1
1,766,539 - DVU1687 0.63 +0.1
1,766,671 + DVU1687 0.81 -1.5
1,766,679 - DVU1687 0.82 -0.4
1,768,057 - +3.4
1,768,085 - -0.3
1,768,127 - +1.6
1,768,151 - -1.4
1,768,279 + DVU1690 0.18 +1.4
1,768,344 - DVU1690 0.29 -0.8
1,768,410 + DVU1690 0.41 -0.5

Or see this region's nucleotide sequence