Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1246

Experiment: MoYLS4 with FCCP 2uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1244 and DVU1245 are separated by 108 nucleotidesDVU1245 and DVU1246 are separated by 11 nucleotidesDVU1246 and DVU1247 are separated by 31 nucleotidesDVU1247 and argS are separated by 20 nucleotides DVU1244: DVU1244 - conserved hypothetical protein (TIGR), at 1,330,922 to 1,331,368 DVU1244 DVU1245: DVU1245 - ABC transporter, ATP-binding protein (TIGR), at 1,331,477 to 1,332,301 DVU1245 DVU1246: DVU1246 - membrane protein, putative (TIGR), at 1,332,313 to 1,333,116 DVU1246 DVU1247: DVU1247 - hypothetical protein (TIGR), at 1,333,148 to 1,333,969 DVU1247 DVU1248: argS - arginyl-tRNA synthetase (TIGR), at 1,333,990 to 1,335,645 argS Position (kb) 1332 1333 1334Strain fitness (log2 ratio) -2 -1 0 1 2at 1331.320 kb on - strand, within DVU1244at 1331.380 kb on + strandat 1331.464 kb on - strandat 1331.609 kb on + strand, within DVU1245at 1331.676 kb on - strand, within DVU1245at 1331.776 kb on + strand, within DVU1245at 1331.908 kb on + strand, within DVU1245at 1331.916 kb on - strand, within DVU1245at 1331.916 kb on - strand, within DVU1245at 1332.151 kb on - strand, within DVU1245at 1332.278 kb on - strandat 1332.401 kb on + strand, within DVU1246at 1332.432 kb on + strand, within DVU1246at 1332.578 kb on + strand, within DVU1246at 1332.586 kb on + strand, within DVU1246at 1332.694 kb on + strand, within DVU1246at 1332.760 kb on - strand, within DVU1246at 1332.849 kb on + strand, within DVU1246at 1333.080 kb on - strandat 1333.177 kb on - strandat 1333.184 kb on - strandat 1333.184 kb on - strandat 1333.241 kb on + strand, within DVU1247at 1333.243 kb on + strand, within DVU1247at 1333.282 kb on + strand, within DVU1247at 1333.476 kb on + strand, within DVU1247at 1333.494 kb on + strand, within DVU1247at 1333.781 kb on - strand, within DVU1247at 1333.803 kb on + strand, within DVU1247at 1333.859 kb on - strand, within DVU1247at 1333.924 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with FCCP 2uM
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1,331,320 - DVU1244 0.89 -0.5
1,331,380 + -0.5
1,331,464 - -0.2
1,331,609 + DVU1245 0.16 -1.4
1,331,676 - DVU1245 0.24 +2.6
1,331,776 + DVU1245 0.36 -1.2
1,331,908 + DVU1245 0.52 +1.6
1,331,916 - DVU1245 0.53 +0.1
1,331,916 - DVU1245 0.53 -0.8
1,332,151 - DVU1245 0.82 +0.6
1,332,278 - -0.5
1,332,401 + DVU1246 0.11 +1.1
1,332,432 + DVU1246 0.15 -1.8
1,332,578 + DVU1246 0.33 -0.5
1,332,586 + DVU1246 0.34 -0.7
1,332,694 + DVU1246 0.47 -0.8
1,332,760 - DVU1246 0.56 -1.3
1,332,849 + DVU1246 0.67 -0.9
1,333,080 - -0.8
1,333,177 - +0.6
1,333,184 - +0.2
1,333,184 - +0.4
1,333,241 + DVU1247 0.11 +0.1
1,333,243 + DVU1247 0.12 +0.1
1,333,282 + DVU1247 0.16 -0.5
1,333,476 + DVU1247 0.40 -0.1
1,333,494 + DVU1247 0.42 +0.4
1,333,781 - DVU1247 0.77 +0.7
1,333,803 + DVU1247 0.80 +0.1
1,333,859 - DVU1247 0.86 -0.2
1,333,924 - +0.5

Or see this region's nucleotide sequence