Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0868

Experiment: MoYLS4 with FCCP 2uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0867 and cdsA are separated by 8 nucleotidescdsA and uppS overlap by 4 nucleotidesuppS and frr are separated by 117 nucleotides DVU0867: DVU0867 - aromatic amino acid decarboxylase, putative (TIGR), at 959,615 to 961,108 DVU0867 DVU0868: cdsA - phosphatidate cytidylyltransferase (TIGR), at 961,117 to 961,923 cdsA DVU0869: uppS - undecaprenyl diphosphate synthase (TIGR), at 961,920 to 962,663 uppS DVU0870: frr - ribosome recycling factor (TIGR), at 962,781 to 963,341 frr Position (kb) 961 962Strain fitness (log2 ratio) -2 -1 0 1at 960.125 kb on + strand, within DVU0867at 960.243 kb on - strand, within DVU0867at 960.269 kb on + strand, within DVU0867at 960.277 kb on - strand, within DVU0867at 960.293 kb on + strand, within DVU0867at 960.368 kb on - strand, within DVU0867at 960.378 kb on + strand, within DVU0867at 960.386 kb on - strand, within DVU0867at 960.386 kb on - strand, within DVU0867at 960.386 kb on - strand, within DVU0867at 960.446 kb on + strand, within DVU0867at 960.721 kb on + strand, within DVU0867at 960.738 kb on - strand, within DVU0867at 960.780 kb on + strand, within DVU0867at 960.783 kb on - strand, within DVU0867at 960.819 kb on - strand, within DVU0867

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with FCCP 2uM
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960,125 + DVU0867 0.34 -0.2
960,243 - DVU0867 0.42 +0.2
960,269 + DVU0867 0.44 -0.2
960,277 - DVU0867 0.44 +0.3
960,293 + DVU0867 0.45 -0.0
960,368 - DVU0867 0.50 -0.1
960,378 + DVU0867 0.51 +0.3
960,386 - DVU0867 0.52 -1.1
960,386 - DVU0867 0.52 -0.3
960,386 - DVU0867 0.52 -1.1
960,446 + DVU0867 0.56 -0.6
960,721 + DVU0867 0.74 -1.8
960,738 - DVU0867 0.75 -1.2
960,780 + DVU0867 0.78 -0.2
960,783 - DVU0867 0.78 -1.8
960,819 - DVU0867 0.81 -2.5

Or see this region's nucleotide sequence