Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0820 and Dshi_5001 are separated by 81 nucleotides Dshi_5001 and Dshi_0821 are separated by 13 nucleotides
Dshi_0820: Dshi_0820 - alpha/beta hydrolase fold (RefSeq), at 824,267 to 825,034
_0820
Dshi_5001: Dshi_5001 - hypothtical protein (RefSeq), at 825,116 to 825,505
_5001
Dshi_0821: Dshi_0821 - Glycine hydroxymethyltransferase (RefSeq), at 825,519 to 826,814
_0821
Position (kb) 825
826 Strain fitness (log2 ratio) -1
0
1 at 824.167 kb on + strand at 824.319 kb on + strand at 824.451 kb on - strand, within Dshi_0820 at 824.451 kb on - strand, within Dshi_0820 at 824.686 kb on + strand, within Dshi_0820 at 824.794 kb on - strand, within Dshi_0820 at 824.876 kb on - strand, within Dshi_0820 at 824.917 kb on + strand, within Dshi_0820 at 824.969 kb on - strand at 825.020 kb on - strand at 825.064 kb on - strand at 825.121 kb on - strand at 825.125 kb on - strand at 825.298 kb on - strand, within Dshi_5001 at 825.309 kb on + strand, within Dshi_5001 at 825.379 kb on + strand, within Dshi_5001 at 825.494 kb on + strand at 825.525 kb on - strand at 825.528 kb on + strand at 825.692 kb on + strand, within Dshi_0821 at 825.713 kb on + strand, within Dshi_0821 at 825.799 kb on - strand, within Dshi_0821 at 825.842 kb on + strand, within Dshi_0821 at 825.850 kb on - strand, within Dshi_0821 at 826.342 kb on - strand, within Dshi_0821 at 826.435 kb on - strand, within Dshi_0821
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 824,167 + -0.3 824,319 + -0.1 824,451 - Dshi_0820 0.24 +1.0 824,451 - Dshi_0820 0.24 +0.6 824,686 + Dshi_0820 0.55 -1.6 824,794 - Dshi_0820 0.69 -0.3 824,876 - Dshi_0820 0.79 -0.3 824,917 + Dshi_0820 0.85 -0.2 824,969 - -0.4 825,020 - +0.9 825,064 - -0.7 825,121 - -0.2 825,125 - -0.2 825,298 - Dshi_5001 0.47 +0.9 825,309 + Dshi_5001 0.49 -0.5 825,379 + Dshi_5001 0.67 -0.4 825,494 + +0.2 825,525 - +0.0 825,528 + -1.6 825,692 + Dshi_0821 0.13 +0.6 825,713 + Dshi_0821 0.15 -0.1 825,799 - Dshi_0821 0.22 -0.3 825,842 + Dshi_0821 0.25 +0.1 825,850 - Dshi_0821 0.26 +0.3 826,342 - Dshi_0821 0.64 +0.4 826,435 - Dshi_0821 0.71 +0.0
Or see this region's nucleotide sequence