Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04017

Experiment: 2-furoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04016 and H281DRAFT_04017 are separated by 133 nucleotidesH281DRAFT_04017 and H281DRAFT_04018 are separated by 138 nucleotides H281DRAFT_04016: H281DRAFT_04016 - MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein, at 117,607 to 118,959 _04016 H281DRAFT_04017: H281DRAFT_04017 - hypothetical protein, at 119,093 to 119,671 _04017 H281DRAFT_04018: H281DRAFT_04018 - glutamate-1-semialdehyde 2,1-aminomutase, at 119,810 to 121,093 _04018 Position (kb) 119 120Strain fitness (log2 ratio) -1 0 1at 118.095 kb on - strand, within H281DRAFT_04016at 118.103 kb on + strand, within H281DRAFT_04016at 118.103 kb on + strand, within H281DRAFT_04016at 118.103 kb on + strand, within H281DRAFT_04016at 118.103 kb on + strandat 118.103 kb on + strand, within H281DRAFT_04016at 118.103 kb on + strand, within H281DRAFT_04016at 118.104 kb on - strand, within H281DRAFT_04016at 118.104 kb on - strand, within H281DRAFT_04016at 118.127 kb on + strand, within H281DRAFT_04016at 118.128 kb on - strand, within H281DRAFT_04016at 118.167 kb on + strand, within H281DRAFT_04016at 118.168 kb on - strand, within H281DRAFT_04016at 118.168 kb on - strand, within H281DRAFT_04016at 118.168 kb on - strand, within H281DRAFT_04016at 118.168 kb on - strand, within H281DRAFT_04016at 118.168 kb on - strand, within H281DRAFT_04016at 118.168 kb on - strand, within H281DRAFT_04016at 118.168 kb on - strand, within H281DRAFT_04016at 118.168 kb on - strand, within H281DRAFT_04016at 118.205 kb on + strand, within H281DRAFT_04016at 118.206 kb on - strand, within H281DRAFT_04016at 118.206 kb on - strand, within H281DRAFT_04016at 118.568 kb on + strand, within H281DRAFT_04016at 118.568 kb on + strand, within H281DRAFT_04016at 118.568 kb on + strand, within H281DRAFT_04016at 118.568 kb on + strand, within H281DRAFT_04016at 118.569 kb on - strand, within H281DRAFT_04016at 118.569 kb on - strand, within H281DRAFT_04016at 118.569 kb on - strand, within H281DRAFT_04016at 118.569 kb on - strand, within H281DRAFT_04016at 118.569 kb on - strand, within H281DRAFT_04016at 118.569 kb on - strand, within H281DRAFT_04016at 118.607 kb on + strand, within H281DRAFT_04016at 118.607 kb on + strand, within H281DRAFT_04016at 118.607 kb on + strand, within H281DRAFT_04016at 118.608 kb on - strand, within H281DRAFT_04016at 118.608 kb on - strand, within H281DRAFT_04016at 118.608 kb on - strand, within H281DRAFT_04016at 118.660 kb on - strand, within H281DRAFT_04016at 118.736 kb on + strand, within H281DRAFT_04016at 118.736 kb on + strand, within H281DRAFT_04016at 118.736 kb on + strand, within H281DRAFT_04016at 118.737 kb on - strand, within H281DRAFT_04016at 118.737 kb on - strand, within H281DRAFT_04016at 118.737 kb on - strand, within H281DRAFT_04016at 118.876 kb on - strandat 118.907 kb on + strandat 119.072 kb on - strandat 119.072 kb on - strandat 119.072 kb on - strandat 119.288 kb on + strand, within H281DRAFT_04017at 119.289 kb on - strand, within H281DRAFT_04017at 119.307 kb on - strand, within H281DRAFT_04017at 119.307 kb on - strand, within H281DRAFT_04017at 119.363 kb on + strand, within H281DRAFT_04017at 119.364 kb on - strand, within H281DRAFT_04017at 119.364 kb on - strand, within H281DRAFT_04017at 119.726 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-furoic (C)
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118,095 - H281DRAFT_04016 0.36 +0.2
118,103 + H281DRAFT_04016 0.37 -0.2
118,103 + H281DRAFT_04016 0.37 +0.8
118,103 + H281DRAFT_04016 0.37 +0.5
118,103 + -1.3
118,103 + H281DRAFT_04016 0.37 +0.3
118,103 + H281DRAFT_04016 0.37 +0.5
118,104 - H281DRAFT_04016 0.37 +0.2
118,104 - H281DRAFT_04016 0.37 -1.2
118,127 + H281DRAFT_04016 0.38 +0.3
118,128 - H281DRAFT_04016 0.39 -0.5
118,167 + H281DRAFT_04016 0.41 +0.6
118,168 - H281DRAFT_04016 0.41 +1.7
118,168 - H281DRAFT_04016 0.41 -0.3
118,168 - H281DRAFT_04016 0.41 +0.3
118,168 - H281DRAFT_04016 0.41 -0.1
118,168 - H281DRAFT_04016 0.41 +0.0
118,168 - H281DRAFT_04016 0.41 -0.2
118,168 - H281DRAFT_04016 0.41 +0.8
118,168 - H281DRAFT_04016 0.41 +0.5
118,205 + H281DRAFT_04016 0.44 -0.1
118,206 - H281DRAFT_04016 0.44 +0.3
118,206 - H281DRAFT_04016 0.44 +0.3
118,568 + H281DRAFT_04016 0.71 +0.4
118,568 + H281DRAFT_04016 0.71 +0.8
118,568 + H281DRAFT_04016 0.71 +0.2
118,568 + H281DRAFT_04016 0.71 -0.6
118,569 - H281DRAFT_04016 0.71 -0.0
118,569 - H281DRAFT_04016 0.71 -0.1
118,569 - H281DRAFT_04016 0.71 +0.5
118,569 - H281DRAFT_04016 0.71 +0.5
118,569 - H281DRAFT_04016 0.71 -0.0
118,569 - H281DRAFT_04016 0.71 +0.7
118,607 + H281DRAFT_04016 0.74 -0.4
118,607 + H281DRAFT_04016 0.74 +0.8
118,607 + H281DRAFT_04016 0.74 -0.3
118,608 - H281DRAFT_04016 0.74 -0.4
118,608 - H281DRAFT_04016 0.74 +0.6
118,608 - H281DRAFT_04016 0.74 +0.4
118,660 - H281DRAFT_04016 0.78 +0.4
118,736 + H281DRAFT_04016 0.83 -0.8
118,736 + H281DRAFT_04016 0.83 +0.1
118,736 + H281DRAFT_04016 0.83 +0.4
118,737 - H281DRAFT_04016 0.84 -0.6
118,737 - H281DRAFT_04016 0.84 -0.0
118,737 - H281DRAFT_04016 0.84 +0.5
118,876 - -0.6
118,907 + +1.6
119,072 - +0.5
119,072 - -0.0
119,072 - -0.1
119,288 + H281DRAFT_04017 0.34 -0.4
119,289 - H281DRAFT_04017 0.34 +0.0
119,307 - H281DRAFT_04017 0.37 +0.4
119,307 - H281DRAFT_04017 0.37 +0.3
119,363 + H281DRAFT_04017 0.47 +0.6
119,364 - H281DRAFT_04017 0.47 +0.1
119,364 - H281DRAFT_04017 0.47 +0.5
119,726 - -1.0

Or see this region's nucleotide sequence