Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03511

Experiment: 2-furoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03510 and H281DRAFT_03511 are separated by 254 nucleotidesH281DRAFT_03511 and H281DRAFT_03512 are separated by 295 nucleotides H281DRAFT_03510: H281DRAFT_03510 - Uncharacterized protein involved in outer membrane biogenesis, at 4,129 to 7,905 _03510 H281DRAFT_03511: H281DRAFT_03511 - Uncharacterized conserved protein, at 8,160 to 9,581 _03511 H281DRAFT_03512: H281DRAFT_03512 - Cu+-exporting ATPase, at 9,877 to 12,234 _03512 Position (kb) 8 9 10Strain fitness (log2 ratio) -2 -1 0 1 2 3at 7.184 kb on + strand, within H281DRAFT_03510at 7.326 kb on + strand, within H281DRAFT_03510at 7.385 kb on - strand, within H281DRAFT_03510at 7.685 kb on - strandat 7.685 kb on - strandat 7.712 kb on + strandat 7.713 kb on - strandat 7.719 kb on + strandat 7.737 kb on + strandat 7.737 kb on + strandat 7.738 kb on - strandat 7.831 kb on + strandat 7.831 kb on + strandat 7.832 kb on - strandat 7.854 kb on + strandat 7.855 kb on - strandat 7.927 kb on - strandat 8.003 kb on + strandat 8.006 kb on - strandat 8.006 kb on - strandat 8.029 kb on - strandat 8.030 kb on + strandat 8.030 kb on + strandat 8.030 kb on + strandat 8.031 kb on - strandat 8.031 kb on - strandat 8.031 kb on - strandat 8.031 kb on - strandat 8.036 kb on + strandat 8.048 kb on - strandat 8.066 kb on + strandat 8.089 kb on + strandat 8.161 kb on + strandat 8.162 kb on - strandat 8.398 kb on + strand, within H281DRAFT_03511at 8.578 kb on + strand, within H281DRAFT_03511at 8.590 kb on + strand, within H281DRAFT_03511at 8.591 kb on - strand, within H281DRAFT_03511at 8.591 kb on - strand, within H281DRAFT_03511at 8.591 kb on - strand, within H281DRAFT_03511at 8.945 kb on - strand, within H281DRAFT_03511at 9.353 kb on + strand, within H281DRAFT_03511at 9.414 kb on + strand, within H281DRAFT_03511at 9.436 kb on + strand, within H281DRAFT_03511at 9.436 kb on + strand, within H281DRAFT_03511at 9.437 kb on - strand, within H281DRAFT_03511at 9.437 kb on - strand, within H281DRAFT_03511at 9.437 kb on - strand, within H281DRAFT_03511at 9.548 kb on - strandat 9.548 kb on - strandat 9.548 kb on - strandat 9.709 kb on + strandat 9.744 kb on + strandat 9.745 kb on - strandat 9.745 kb on - strandat 9.866 kb on + strandat 9.866 kb on + strandat 9.866 kb on + strandat 9.867 kb on - strandat 9.867 kb on - strandat 10.150 kb on + strand, within H281DRAFT_03512at 10.448 kb on - strand, within H281DRAFT_03512at 10.525 kb on + strand, within H281DRAFT_03512at 10.525 kb on + strand, within H281DRAFT_03512at 10.540 kb on + strand, within H281DRAFT_03512at 10.541 kb on - strand, within H281DRAFT_03512at 10.548 kb on - strand, within H281DRAFT_03512at 10.579 kb on + strand, within H281DRAFT_03512at 10.579 kb on + strand, within H281DRAFT_03512at 10.579 kb on + strand, within H281DRAFT_03512

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-furoic (C)
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7,184 + H281DRAFT_03510 0.81 -0.1
7,326 + H281DRAFT_03510 0.85 -0.0
7,385 - H281DRAFT_03510 0.86 -0.1
7,685 - -0.5
7,685 - -0.1
7,712 + -0.1
7,713 - -0.9
7,719 + +0.7
7,737 + +0.4
7,737 + -0.4
7,738 - +0.3
7,831 + +0.7
7,831 + +0.9
7,832 - +0.1
7,854 + +0.4
7,855 - +1.6
7,927 - -0.4
8,003 + +0.4
8,006 - +0.7
8,006 - +2.9
8,029 - -0.3
8,030 + +0.2
8,030 + -0.1
8,030 + -0.6
8,031 - -1.5
8,031 - +0.5
8,031 - -0.6
8,031 - +1.4
8,036 + +0.0
8,048 - -0.3
8,066 + -0.1
8,089 + +0.1
8,161 + -0.6
8,162 - +0.8
8,398 + H281DRAFT_03511 0.17 +0.1
8,578 + H281DRAFT_03511 0.29 -0.2
8,590 + H281DRAFT_03511 0.30 -0.2
8,591 - H281DRAFT_03511 0.30 -0.4
8,591 - H281DRAFT_03511 0.30 -0.4
8,591 - H281DRAFT_03511 0.30 +0.2
8,945 - H281DRAFT_03511 0.55 +0.5
9,353 + H281DRAFT_03511 0.84 +0.6
9,414 + H281DRAFT_03511 0.88 +0.8
9,436 + H281DRAFT_03511 0.90 -1.2
9,436 + H281DRAFT_03511 0.90 -0.1
9,437 - H281DRAFT_03511 0.90 -0.3
9,437 - H281DRAFT_03511 0.90 +0.3
9,437 - H281DRAFT_03511 0.90 +0.2
9,548 - +0.8
9,548 - +0.5
9,548 - +1.2
9,709 + +0.3
9,744 + -0.4
9,745 - -0.0
9,745 - -0.5
9,866 + -0.4
9,866 + -0.2
9,866 + -1.5
9,867 - +0.5
9,867 - -0.5
10,150 + H281DRAFT_03512 0.12 -0.4
10,448 - H281DRAFT_03512 0.24 -1.4
10,525 + H281DRAFT_03512 0.27 -0.6
10,525 + H281DRAFT_03512 0.27 -1.4
10,540 + H281DRAFT_03512 0.28 -1.4
10,541 - H281DRAFT_03512 0.28 -1.0
10,548 - H281DRAFT_03512 0.28 -2.1
10,579 + H281DRAFT_03512 0.30 -1.1
10,579 + H281DRAFT_03512 0.30 +1.0
10,579 + H281DRAFT_03512 0.30 +0.1

Or see this region's nucleotide sequence